Gene: GRTP1 (growth hormone regulated TBC protein 1) Chlorocebus sabaeus |
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Analyze |
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Symbol: |
GRTP1 |
Name: |
growth hormone regulated TBC protein 1 |
RGD ID: |
18572838 |
Description: |
ASSOCIATED WITH factor X deficiency (ortholog); genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
growth hormone-regulated TBC protein 1 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 3 | 91,320,711 - 91,375,510 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 91,321,010 - 91,356,250 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666046 | 48,368,382 - 48,414,832 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
GRTP1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 3 | 91,320,711 - 91,375,510 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 91,321,010 - 91,356,250 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666046 | 48,368,382 - 48,414,832 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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GRTP1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 113,324,163 - 113,364,148 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 113,324,163 - 113,364,148 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 113,978,478 - 114,018,463 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 113,026,506 - 113,066,464 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 13 | 113,027,160 - 113,057,718 | NCBI | | | | | Celera | 13 | 94,805,016 - 94,846,427 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | q34 | NCBI | | | | | HuRef | 13 | 94,417,142 - 94,447,381 (-) | NCBI | | HuRef | | | CHM1_1 | 13 | 113,947,496 - 113,986,324 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 112,577,719 - 112,618,348 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Grtp1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 13,226,869 - 13,250,695 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 13,222,022 - 13,250,620 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 13,176,869 - 13,200,766 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 13,172,022 - 13,200,620 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 13,176,869 - 13,200,624 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 13,176,846 - 13,200,601 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 13,345,188 - 13,368,837 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | A1.1 | NCBI | | | | | cM Map | 8 | 5.73 | NCBI | | | | |
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Grtp1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 16 | 83,034,931 - 83,056,589 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 16 | 76,332,777 - 76,356,414 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 16 | 76,283,103 - 76,354,440 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 16 | 81,613,380 - 81,635,002 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 16 | 85,065,957 - 85,087,579 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 16 | 80,314,662 - 80,336,321 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 16 | 81,665,533 - 81,689,525 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 16 | 81,665,540 - 81,688,148 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 16 | 81,153,629 - 81,174,084 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 16 | 81,190,323 - 81,211,432 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 16 | 81,185,066 - 81,211,507 (+) | NCBI | | | | | Celera | 16 | 74,139,452 - 74,160,806 (+) | NCBI | | Celera | | | Cytogenetic Map | 16 | q12.5 | NCBI | | | | |
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Grtp1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955404 | 532,759 - 555,788 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955404 | 532,866 - 555,366 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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GRTP1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 114,827,158 - 114,867,408 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 113,516,313 - 113,556,247 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 94,464,835 - 94,504,833 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 113,530,943 - 113,561,023 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 113,530,950 - 113,561,023 (-) | Ensembl | panpan1.1 | | panPan2 | |
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GRTP1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 22 | 60,696,768 - 60,713,242 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 22 | 60,696,768 - 60,713,632 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 22 | 60,408,791 - 60,425,228 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 22 | 61,381,999 - 61,398,409 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 22 | 61,382,002 - 61,398,562 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 22 | 60,820,828 - 60,837,262 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 22 | 60,823,014 - 60,839,457 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 22 | 60,854,101 - 60,870,547 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Grtp1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GRTP1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 11 | 78,618,713 - 78,637,478 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 78,618,720 - 78,637,502 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 86,410,926 - 86,425,609 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Grtp1 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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endocrine system |
hemolymphoid system |
nervous system |
High |
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Medium |
19
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7
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Low |
17
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14
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50
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Below cutoff |
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6
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3
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Sequence
RefSeq Acc Id: |
ENSCSAT00000015531 ⟹ ENSCSAP00000013469 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 Ensembl | 3 | 91,321,010 - 91,356,250 (-) | Ensembl |
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RefSeq Acc Id: |
XM_007960992 ⟹ XP_007959183 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 3 | 91,321,570 - 91,356,330 (-) | NCBI | Vero_WHO_p1.0 | NW_023666046 | 48,370,726 - 48,414,832 (-) | NCBI |
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Sequence: |
AGCCCCGCCCCCCGCGCCCGTGGTCCCGCCGGAAGGACTTGAGCGCCCAGGAGCCGGGAGGCGA ACCTGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCACATGGAGCCCCCCGAGCGCT CGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTA CGAGAAGTTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTG CTGCAGGGCGGGAGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAGGGGGTCCCGC TGGAGCACCGTGCCCGCGTCTGGATGGCGCTGAGTGGGGCCCAGGCTCAGATGGACCAGAATCC CGGCTACTATCACCGGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACA GACCTCAACCGGACCTTCCCCGACAATGTGAAGTTTCGGAAGACCACGGACCCCTGCTTGCAGA AGACCCTGTACAATGTGCTGCTGGCATATGGGCACCATAACCAGGGAGTGGGCTACTGCCAGGG AATGAATTTTATAGCAGGATATCTGATTCTTATAACGAATAATGAAGAAGAATCTTTTTGGCTG TTAGATGCTCTTGTTGGAAGAATACTACCTGATTACTACAGCCCGGCCATGCTGGGCCTGAAGA CCGACCAGGAGGTCCTTGGGGAGCTGGTGCGGGCGAAGCTGCCGGCCGTGGGGGCCCTGATGGA GCGGCTGGGCGTGCTGTGGACGCTGGTGGTGTCCCGCTGGTTCATCTGCCTGTTTGTCGACGTC CTGCCCGTGGAGACAGTGCTTCGGATCTGGGACTGTTTGTTTAATGAGGGCTCGAAGATTATCT TCCGGGTGGCCCTGACCTTAATTAAGCAGCACCAGGAGTTTATTTTGGAAGCCACCAGCATTCC AGACATTTGCGATAAGTTTAAGCAGATAACCAAAGGCAGTTTCGTGATGGAGTGTCACACGTTT ATGCAGGTGAGTGTCTGCAGGGCTGCACGTGGCTCCGTCCTCTCCCAGGGGGCCCCACCTCACC TGCAGCCCGGGGGCTCCTCTGACCACCCGGAGGGTGCACAGGACGGGCACCAGTGAGCACAGGG CACAGGACGAGCCTCCAGCTCTGTCCTGCGTCTGCCCCCTGTGCCTGGCCTCCGACGGCTTTCC TGTCCACGGCAGCCCTGTCTTCTCGGCCCTGGCACTGTGGACGCTGGTCCTGGTCCTAATGGCT GTACTCATCTGTTGTGCGTGGTGCCAGAAGTGTGCTTCCCCAGGCCCAGCCTCTCCACTGGGTC CTGGGCCTGGCGCAGGCTGTATAGACTCAGGCCCTGATGAGGGGGTCGTGGGAACTGCACCCGA CAGGCCTTCTGAGGAGACCATGATGCTAGGAGAGGCTCAGGCCCGGGATGCAGAGTCAGTAGCT TCCTGAGAGGGAGGGAGTGGAGGCTCGGGGCCACTCTGGGTGCAGCAGGGCAAACGTGGGCTGT ATTTCAGCAGCCGGGGCTTCATCAAAGAGAAGACCATGTTGGCTGGGCACAGTGGCTCATGCCT GTTATCCCAGCACTTTGGGAGGCCAAGGCGTGTGGATCACCTGAGGTCAGGAG
hide sequence
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RefSeq Acc Id: |
XM_007960993 ⟹ XP_007959184 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 3 | 91,320,711 - 91,356,327 (-) | NCBI | Vero_WHO_p1.0 | NW_023666046 | 48,368,383 - 48,414,832 (-) | NCBI |
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Sequence: |
CCCGCCCCCCGCGCCCGTGGTCCCGCCGGAAGGACTTGAGCGCCCAGGAGCCGGGAGGCGAACC TGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCACATGGAGCCCCCCGAGCGCTCGC GGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGA GAAGTTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTG CAGGGCGGGAGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAGGGGGTCCCGCTGG AGCACCGTGCCCGCGTCTGGATGGCGCTGAGTGGGGCCCAGGCTCAGATGGACCAGAATCCCGG CTACTATCACCGGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAC CTCAACCGGACCTTCCCCGACAATGTGAAGTTTCGGAAGACCACGGACCCCTGCTTGCAGAAGA CCCTGTACAATGTGCTGCTGGCATATGGGCACCATAACCAGGGAGTGGGCTACTGCCAGGGAAT GAATTTTATAGCAGGATATCTGATTCTTATAACGAATAATGAAGAAGAATCTTTTTGGCTGTTA GATGCTCTTGTTGGAAGAATACTACCTGATTACTACAGCCCGGCCATGCTGGGCCTGAAGACCG ACCAGGAGGTCCTTGGGGAGCTGGTGCGGGCGAAGCTGCCGGCCGTGGGGGCCCTGATGGAGCG GCTGGGCGTGCTGTGGACGCTGGTGGTGTCCCGCTGGTTCATCTGCCTGTTTGTCGACGTCCTG CCCGTGGAGACAGTGCTTCGGATCTGGGACTGTTTGTTTAATGAGGGCTCGAAGATTATCTTCC GGGTGGCCCTGACCTTAATTAAGCAGCACCAGGAGTTTATTTTGGAAGCCACCAGCATTCCAGA CATTTGCGATAAGTTTAAGCAGATAACCAAAGGCAGTTTCGTGATGGAGTGTCACACGTTTATG CAGAAAATATTTTCAGAACCTGGAAGCCTATCCATGGCCACCGTCGCCAAGCTGCGCGAGAGCT GCAGGGCCCGGCTCCTGGCACAGGGGTGAGTGTGCCTGTCTCCTGCGTTGCTCGTCTCCGCACA GACGGCGATTCTCCTTTCCAGAGTTGACACTGGACCAGCTTTCACTGCTTTCCTTTTTAGTGTT GTAAATACTTGACATCACTGCATTGTAGTTGTGAATTTTTTAAAAGAGCAGTTTAAAACCAGGT CATTCTACCAGCTTTTGATTAGTTATGAAGTCATACTTTTTAAAGAAAACTTTTTACCTGAGAT ATCAATAATATATAAAATGTGAGATGTGGCTTTGTATCTAATAAAGGATGCTAATCAGTTTCTC AGCTGACT
hide sequence
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RefSeq Acc Id: |
XM_007960994 ⟹ XP_007959185 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 3 | 91,320,711 - 91,356,312 (-) | NCBI | Vero_WHO_p1.0 | NW_023666046 | 48,368,382 - 48,414,832 (-) | NCBI |
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Sequence: |
CGTGGTCCCGCCGGAAGGACTTGAGCGCCCAGGAGCCGGGAGGCGAACCTGGGACCCGCTGGCC TCGCTCGGTGCGCGCCTCCCTCCCCACATGGAGCCCCCCGAGCGCTCGCGGGTCCCCAGGATCG ACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAGTTTTTCTCCAG CTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGAGCGTC CCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAGGGGGTCCCGCTGGAGCACCGTGCCCGCG TCTGGATGGCGCTGAGTGGGGCCCAGGCTCAGATGGACCAGAATCCCGGCTACTATCACCGGCT TCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGACCTCAACCGGACCTTC CCCGACAATGTGAAGTTTCGGAAGACCACGGACCCCTGCTTGCAGAAGACCCTGTACAATGTGC TGCTGGCATATGGGCACCATAACCAGGGAGTGGGCTACTGCCAGGGAATGAATTTTATAGCAGG ATATCTGATTCTTATAACGAATAATGAAGAAGAATCTTTTTGGCTGTTAGATGCTCTTGTTGGA AGAATACTACCTGAAAATATTTTCAGAACCTGGAAGCCTATCCATGGCCACCGTCGCCAAGCTG CGCGAGAGCTGCAGGGCCCGGCTCCTGGCACAGGGGTGAGTGTGCCTGTCTCCTGCGTTGCTCG TCTCCGCACAGACGGCGATTCTCCTTTCCAGAGTTGACACTGGACCAGCTTTCACTGCTTTCCT TTTTAGTGTTGTAAATACTTGACATCACTGCATTGTAGTTGTGAATTTTTTAAAAGAGCAGTTT AAAACCAGGTCATTCTACCAGCTTTTGATTAGTTATGAAGTCATACTTTTTAAAGAAAACTTTT TACCTGAGATATCAATAATATATAAAATGTGAGATGTGGCTTTGTATCTAATAAAGGATGCTAA TCAGTTTCTCAGCTGACT
hide sequence
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RefSeq Acc Id: |
XP_007959184 ⟸ XM_007960993 |
- Peptide Label: |
isoform X2 |
- UniProtKB: |
A0A0D9RXY0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_007959185 ⟸ XM_007960994 |
- Peptide Label: |
isoform X3 |
RefSeq Acc Id: |
XP_007959183 ⟸ XM_007960992 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
ENSCSAP00000013469 ⟸ ENSCSAT00000015531 |
Additional Information
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