GRTP1 (growth hormone regulated TBC protein 1) - Rat Genome Database

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Gene: GRTP1 (growth hormone regulated TBC protein 1) Chlorocebus sabaeus
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Symbol: GRTP1
Name: growth hormone regulated TBC protein 1
RGD ID: 18572838
Description: ASSOCIATED WITH factor X deficiency (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: growth hormone-regulated TBC protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,320,711 - 91,375,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,321,010 - 91,356,250 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604648,368,382 - 48,414,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
GRTP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,320,711 - 91,375,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,321,010 - 91,356,250 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604648,368,382 - 48,414,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GRTP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,324,163 - 113,364,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,324,163 - 113,364,148 (-)EnsemblGRCh38hg38GRCh38
GRCh3713113,978,478 - 114,018,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,026,506 - 113,066,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413113,027,160 - 113,057,718NCBI
Celera1394,805,016 - 94,846,427 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,417,142 - 94,447,381 (-)NCBIHuRef
CHM1_113113,947,496 - 113,986,324 (-)NCBICHM1_1
T2T-CHM13v2.013112,577,719 - 112,618,348 (-)NCBIT2T-CHM13v2.0
Grtp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,226,869 - 13,250,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,222,022 - 13,250,620 (-)EnsemblGRCm39 Ensembl
GRCm38813,176,869 - 13,200,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,172,022 - 13,200,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv37813,176,869 - 13,200,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,176,846 - 13,200,601 (-)NCBIMGSCv36mm8
Celera813,345,188 - 13,368,837 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Grtp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,034,931 - 83,056,589 (+)NCBIGRCr8
mRatBN7.21676,332,777 - 76,356,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,283,103 - 76,354,440 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,613,380 - 81,635,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,065,957 - 85,087,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,314,662 - 80,336,321 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,665,533 - 81,689,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,665,540 - 81,688,148 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,153,629 - 81,174,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,190,323 - 81,211,432 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11681,185,066 - 81,211,507 (+)NCBI
Celera1674,139,452 - 74,160,806 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Grtp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404532,759 - 555,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955404532,866 - 555,366 (+)NCBIChiLan1.0ChiLan1.0
GRTP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214114,827,158 - 114,867,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,516,313 - 113,556,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,464,835 - 94,504,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,530,943 - 113,561,023 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,530,950 - 113,561,023 (-)Ensemblpanpan1.1panPan2
GRTP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,696,768 - 60,713,242 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,696,768 - 60,713,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,408,791 - 60,425,228 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,381,999 - 61,398,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,382,002 - 61,398,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,820,828 - 60,837,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,823,014 - 60,839,457 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,854,101 - 60,870,547 (-)NCBIUU_Cfam_GSD_1.0
Grtp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,575,797 - 195,599,644 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472352,463 - 376,382 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472352,515 - 376,358 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRTP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,618,713 - 78,637,478 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,618,720 - 78,637,502 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,410,926 - 86,425,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Grtp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793640,017 - 659,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793640,063 - 660,002 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19 7
Low 17 14 50
Below cutoff 6 3

Sequence


RefSeq Acc Id: ENSCSAT00000015531   ⟹   ENSCSAP00000013469
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl391,321,010 - 91,356,250 (-)Ensembl
RefSeq Acc Id: XM_007960992   ⟹   XP_007959183
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1391,321,570 - 91,356,330 (-)NCBI
Vero_WHO_p1.0NW_02366604648,370,726 - 48,414,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960993   ⟹   XP_007959184
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1391,320,711 - 91,356,327 (-)NCBI
Vero_WHO_p1.0NW_02366604648,368,383 - 48,414,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960994   ⟹   XP_007959185
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1391,320,711 - 91,356,312 (-)NCBI
Vero_WHO_p1.0NW_02366604648,368,382 - 48,414,832 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007959183 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959184 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013469
  ENSCSAP00000013469.1
RefSeq Acc Id: XP_007959184   ⟸   XM_007960993
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007959185   ⟸   XM_007960994
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007959183   ⟸   XM_007960992
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000013469   ⟸   ENSCSAT00000015531


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017435 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015531.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
NCBI Gene GRTP1 ENTREZGENE
PANTHER GTPASE ACTIVATING PROTEIN GYP2 UniProtKB/TrEMBL
  RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/TrEMBL
Pfam RabGAP-TBC UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A0D9RXY0 ENTREZGENE, UniProtKB/TrEMBL