TES (testin LIM domain protein) - Rat Genome Database

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Gene: TES (testin LIM domain protein) Chlorocebus sabaeus
Analyze
Symbol: TES
Name: testin LIM domain protein
RGD ID: 18571713
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN negative regulation of cell population proliferation (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); glioblastoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12184,913,067 - 84,963,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2184,913,093 - 84,963,303 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604218,799,132 - 18,844,419 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TES
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12184,913,067 - 84,963,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2184,913,093 - 84,963,303 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604218,799,132 - 18,844,419 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387116,210,539 - 116,258,783 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7116,210,506 - 116,258,783 (+)EnsemblGRCh38hg38GRCh38
GRCh377115,850,593 - 115,898,837 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367115,637,817 - 115,686,073 (+)NCBINCBI36Build 36hg18NCBI36
Celera7110,657,947 - 110,706,196 (+)NCBICelera
Cytogenetic Map7q31.2NCBI
HuRef7110,216,624 - 110,264,907 (+)NCBIHuRef
CHM1_17115,783,744 - 115,832,054 (+)NCBICHM1_1
T2T-CHM13v2.07117,525,529 - 117,573,770 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27115,245,942 - 115,294,229 (+)NCBI
Tes
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39617,065,148 - 17,105,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl617,065,148 - 17,105,827 (+)EnsemblGRCm39 Ensembl
GRCm38617,065,149 - 17,105,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl617,065,149 - 17,105,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv37617,015,149 - 17,055,825 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36617,015,200 - 17,055,825 (+)NCBIMGSCv36mm8
Celera617,137,949 - 17,178,804 (+)NCBICelera
Cytogenetic Map6A2NCBI
cM Map67.67NCBI
Tes
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8446,331,257 - 46,369,782 (+)NCBIGRCr8
mRatBN7.2445,365,304 - 45,403,829 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl445,365,285 - 45,403,829 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx450,366,261 - 50,412,536 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0446,287,252 - 46,333,519 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0444,704,633 - 44,743,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0444,321,883 - 44,360,407 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl444,321,883 - 44,360,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0444,929,781 - 44,968,305 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4442,680,722 - 42,719,246 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera440,655,536 - 40,694,015 (+)NCBICelera
Cytogenetic Map4q22NCBI
Tes
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543222,014,444 - 22,035,636 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543221,992,708 - 22,035,441 (+)NCBIChiLan1.0ChiLan1.0
TES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26153,035,730 - 153,084,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan175,044,942 - 5,094,479 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07108,176,519 - 108,224,816 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17120,873,407 - 120,922,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7120,873,762 - 120,922,333 (+)Ensemblpanpan1.1panPan2
TES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11455,217,768 - 55,240,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1455,177,375 - 55,240,668 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1454,588,694 - 54,636,021 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01455,231,813 - 55,279,332 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1455,231,648 - 55,279,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11455,263,314 - 55,310,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01454,952,074 - 54,999,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01455,322,418 - 55,369,952 (+)NCBIUU_Cfam_GSD_1.0
Tes
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511843,893,609 - 43,933,961 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365892,755,903 - 2,796,308 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365892,755,905 - 2,796,244 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1829,895,882 - 29,936,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11829,895,878 - 29,936,248 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21831,991,868 - 32,012,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tes
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248273,206,196 - 3,249,025 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248273,208,246 - 3,248,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 20 20
Low 16 40
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009020   ⟹   ENSCSAP00000007151
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2184,913,093 - 84,963,303 (+)Ensembl
RefSeq Acc Id: XM_038004454   ⟹   XP_037860382
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604218,799,132 - 18,844,419 (-)NCBI
RefSeq Acc Id: XM_038004455   ⟹   XP_037860383
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604218,799,132 - 18,843,032 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037860382 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860383 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007151.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000007151   ⟸   ENSCSAT00000009020
RefSeq Acc Id: XP_037860382   ⟸   XM_038004454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037860383   ⟸   XM_038004455
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010935 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009020.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro LIM1_Testin UniProtKB/TrEMBL
  LIM2_Testin UniProtKB/TrEMBL
  LIM3_Testin UniProtKB/TrEMBL
  PET_domain UniProtKB/TrEMBL
  PET_testin UniProtKB/TrEMBL
  Pk/Esn/Tes UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report csab:103226766 UniProtKB/TrEMBL
NCBI Gene TES ENTREZGENE
PANTHER LIM DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR24211:SF1 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A0D9REW2_CHLSB UniProtKB/TrEMBL