RTP4 (receptor transporter protein 4)

Gene: RTP4 (receptor transporter protein 4) Chlorocebus sabaeus

Analyze

Symbol:

RTP4

Name:

receptor transporter protein 4

RGD ID:

18562701

Description:

ENCODES a protein that exhibits olfactory receptor binding (inferred); INVOLVED IN defense response to virus (inferred); detection of chemical stimulus involved in sensory perception of bitter taste (inferred); protein insertion into membrane (inferred); ASSOCIATED WITH genetic disease (ortholog); Human Influenza (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

receptor-transporting protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	81,639,422 - 81,643,045 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	81,639,669 - 81,643,058 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	55,130,546 - 55,134,730 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Human Influenza (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to virus (IEA)

detection of chemical stimulus involved in sensory perception of bitter taste (IEA)

protein insertion into membrane (IEA)

protein targeting to membrane (IEA)

Cellular Component

cytoplasm (IEA)

membrane (IEA)

Molecular Function

olfactory receptor binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RTP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	81,639,422 - 81,643,045 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	81,639,669 - 81,643,058 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	55,130,546 - 55,134,730 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RTP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	187,368,385 - 187,372,076 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	187,368,385 - 187,372,076 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	187,086,173 - 187,089,864 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	188,568,862 - 188,572,066 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	185,518,026 - 185,521,231 (+)	NCBI		Celera
Cytogenetic Map	3	q27.3	NCBI
HuRef	3	184,491,806 - 184,495,011 (+)	NCBI		HuRef
CHM1_1	3	187,049,458 - 187,052,664 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	190,185,796 - 190,189,481 (+)	NCBI		T2T-CHM13v2.0

Rtp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	23,338,976 - 23,432,972 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	23,339,041 - 23,432,972 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	23,520,219 - 23,614,222 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	23,520,291 - 23,614,222 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	23,610,005 - 23,614,308 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	23,525,276 - 23,529,566 (+)	NCBI		MGSCv36	mm8
Celera	16	24,169,055 - 24,173,358 (+)	NCBI		Celera
Cytogenetic Map	16	B1	NCBI
cM Map	16	14.55	NCBI

Rtp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	90,741,992 - 90,840,061 (-)	NCBI		GRCr8
mRatBN7.2	11	77,237,341 - 77,249,194 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	77,238,216 - 77,335,437 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	85,988,617 - 85,999,968 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	78,623,838 - 78,635,191 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	77,702,914 - 77,714,261 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	80,638,945 - 80,650,802 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	80,638,945 - 80,650,802 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	80,084,427 - 80,096,284 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	79,433,553 - 79,445,410 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	79,491,827 - 79,496,117 (-)	NCBI
Celera	11	76,113,925 - 76,125,772 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Rtp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	20,435,924 - 20,459,440 (-)	NCBI	ChiLan1.0	ChiLan1.0

RTP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	185,237,860 - 185,241,383 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	185,242,834 - 185,246,591 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	184,394,076 - 184,397,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	192,858,065 - 192,861,321 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	192,857,778 - 192,864,206 (+)	Ensembl	panpan1.1		panPan2

RTP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	19,828,751 - 19,881,672 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	19,828,988 - 19,831,943 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	23,921,872 - 24,036,125 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	19,748,457 - 19,862,889 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	19,748,538 - 19,751,750 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	19,777,776 - 19,891,808 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	19,771,397 - 19,885,592 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	20,011,117 - 20,125,445 (+)	NCBI		UU_Cfam_GSD_1.0

Rtp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	116,615,572 - 116,618,419 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936578	2,707,432 - 2,710,230 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	125,098,503 - 125,106,770 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	31	20	44
Below cutoff	5		16

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008009500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000007239 ⟹ ENSCSAP00000005426

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	15	81,639,669 - 81,643,058 (+)	Ensembl

RefSeq Acc Id:

XM_008009500 ⟹ XP_008007691

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	15	81,639,422 - 81,643,045 (+)	NCBI
Vero_WHO_p1.0	NW_023666041	55,130,546 - 55,134,730 (+)	NCBI

Sequence:

show sequence

GCTAACCTGCAAAATTCCAAGAATAATCCAACCTCGGGGGACTGGCGAGGATTCATCAGGTGCG
TGAGATGAGCGTGAAACTCGTGCTCCCTTATTCTGCTCCTAACCGCCCTGTCTCCTCCACCAGG
GTGTGAGCGTCTGTGGGGGTAGGAACCGTTTCTGAGCTACAGGATACTCTTTTATCCCAGTGCC
AAAATAGTGCTTTGCCTATTATAAAAAATGAGAGAAATAAAATAAAAGCGAATTTATATGTGAC
CCAGAATCTAGAACAGAGCTCTCTCTCTCTCAGCAAGGCCTATTAGCTAAAAAAGTTCTGCTGC
TCTCTGTCCTCCGAACAAAGACTTGTTCTGTGTCCCCAGACAGTAAATAAAACAGTTCCTGTCC
ACACACGGAAACAAACAGAAACTGAACTGAACACCGAAACTGAAACTGTTTGTCTCTTCCTGAG
AAACGAGCAAACCTGAAAGGTGCTCTCTGAGCTTCAGAGAGAAAAAATGGTTGTAGATCTCCGG
ACTTGGGAGCAGACATTTCAAGAACTAATCCAAGAGGCAAAACCCTGGGCCAAATGGACGCTGA
AGTTGGATGGAAACCTTCAGCTAGACTGCCTGGCTCGAGGGTGGAAGCAATACCAACAGAGAGC
ATTTGGCTGGTTCCGGTGTTCTTCCTGCCAGCGAAGCTGGGCTTCCGCCCAGGTGCAGATTCTG
TGCCACACGTCCTGGGAGCACTGGACATCTCAGGGCCAGGTGCGTATGAGGCTCTTTGGCCAAA
GGTGCCAGAAGTGCTCCTGGTCCCAATATGAGATGCCTGAGTTCTCCTCGGATAGCACCATGAG
GATTCTGAGCAACCTGGTGCAGCATATACTGAAGAAATACTATGGAAATGGTGCGAGGAAGTCT
CCGGAAATGCCAGTAATCCATGAAGTGGCCCTGGAAGGATCCCATGACACAGCCAATTGTGAGG
CATGCACTCTGGGCATCTGTGGACACGGCTTAAAAAGCTACATGACAAAGCCATCCAAATCCCC
ACTCTCCCACCTAAAGACTGGGAATTCCTCACCTGGAATTGGTGCTGCATACATCCCAGACCAA
GGCAAGAACCAGTCAGCTGAGACAAAAGAGGCTAAGGGGAGAGGGTATGAGAAATTAGGGCCCA
GTCGAGACCCAGATCCATTGAACATCTGGGTCTTTGTTTTGCTGCTTGTATTTATTATAGTCAA
ATGCTTTACATCAGAATGATGAAAATAGGCTTGCCACCTTCTCTTGTTTTAATTCCATGGTAAT
CAATGAACTGGCTGCCATTTTAATATAACTGAGAATTTGCTTTGAGACCAAGCAGGATCAAGTT
TGTAGAATAAACACTGCTTTCCTAGTTATCCTCTGAAAACAGTGTAAAACATGACCAAACACAT
AATAAATTTAGTAATAAACATTGTCGAATTGCTAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008007691	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000005426.1

RefSeq Acc Id:	XP_008007691 ⟸ XM_008009500
- UniProtKB:	A0A0D9R9Y7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000005426 ⟸ ENSCSAT00000007239

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000009173	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000007239.1	UniProtKB/TrEMBL
InterPro	R-trans_p	UniProtKB/TrEMBL
	Znf-3CxxC	UniProtKB/TrEMBL
KEGG Report	csab:103241881	UniProtKB/TrEMBL
NCBI Gene	RTP4	ENTREZGENE
PANTHER	PTHR14402	UniProtKB/TrEMBL
	PTHR14402:SF8	UniProtKB/TrEMBL
Pfam	zf-3CxxC	UniProtKB/TrEMBL
SMART	zf-3CxxC	UniProtKB/TrEMBL
UniProt	A0A0D9R9Y7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD