SLC35A4 (solute carrier family 35 member A4) - Rat Genome Database

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Gene: SLC35A4 (solute carrier family 35 member A4) Chlorocebus sabaeus
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Symbol: SLC35A4
Name: solute carrier family 35 member A4
RGD ID: 18561806
Description: ENCODES a protein that exhibits pyrimidine nucleotide-sugar transmembrane transporter activity (inferred); INVOLVED IN positive regulation of translation in response to stress (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable UDP-sugar transporter protein SLC35A4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,209,396 - 43,213,621 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,211,716 - 43,212,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,670,796 - 34,675,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC35A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,209,396 - 43,213,621 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,211,716 - 43,212,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,670,796 - 34,675,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC35A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,564,828 - 140,569,100 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,564,446 - 140,569,100 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,944,413 - 139,948,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,924,604 - 139,928,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,924,603 - 139,928,867NCBI
Celera5136,021,170 - 136,025,433 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,089,755 - 135,094,018 (+)NCBIHuRef
CHM1_15139,377,668 - 139,381,931 (+)NCBICHM1_1
T2T-CHM13v2.05141,090,259 - 141,094,531 (+)NCBIT2T-CHM13v2.0
Slc35a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,812,268 - 36,816,915 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,812,268 - 36,816,914 (+)EnsemblGRCm39 Ensembl
GRCm381836,679,215 - 36,683,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,679,215 - 36,683,861 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,838,869 - 36,843,516 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,805,566 - 36,809,831 (+)NCBIMGSCv36mm8
Celera1837,128,348 - 37,133,004 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Slc35a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,555,471 - 28,558,639 (+)NCBIGRCr8
mRatBN7.21828,280,483 - 28,284,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,279,750 - 28,284,725 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,408,579 - 28,411,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,170,670 - 29,173,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,505,908 - 28,509,076 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,505,239 - 29,509,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,506,128 - 29,509,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,210,348 - 29,214,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,318,679 - 29,321,847 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,345,324 - 29,348,493 (+)NCBI
Celera1828,008,608 - 28,011,776 (+)NCBICelera
Cytogenetic Map18p11NCBI
Slc35a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418115,895 - 116,863 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418114,916 - 116,878 (-)NCBIChiLan1.0ChiLan1.0
LOC100975969
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,822,260 - 135,826,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,961,807 - 133,966,188 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,928,922 - 135,933,498 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,046,118 - 142,050,655 (+)NCBIpanpan1.1PanPan1.1panPan2
SLC35A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,761,589 - 35,763,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,761,626 - 35,762,600 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,799,834 - 32,801,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,216,233 - 36,218,143 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,213,562 - 36,218,143 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,269,104 - 33,271,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,136,642 - 34,138,551 (+)NCBIUNSW_CanFamBas_1.0
LOC101976450
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,077,342 - 152,079,579 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,534,340 - 9,535,308 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,531,885 - 9,536,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,323,341 - 142,325,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,320,884 - 142,342,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,267,140 - 148,288,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc35a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,331,326 - 33,332,300 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,331,276 - 33,333,192 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 2 30
Low 18 30
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008014685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000018042   ⟹   ENSCSAP00000017511
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2343,211,716 - 43,212,690 (+)Ensembl
RefSeq Acc Id: XM_008014685   ⟹   XP_008012876
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12343,209,396 - 43,213,621 (+)NCBI
Vero_WHO_p1.0NW_02366603434,670,796 - 34,675,128 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008012876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017511
  ENSCSAP00000017511.1
RefSeq Acc Id: XP_008012876   ⟸   XM_008014685
- UniProtKB: A0A0D9S9H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017511   ⟸   ENSCSAT00000018042


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000493 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018042.1 UniProtKB/TrEMBL
InterPro Nuc_sug_transpt UniProtKB/TrEMBL
KEGG Report csab:103244658 UniProtKB/TrEMBL
NCBI Gene SLC35A4 ENTREZGENE
PANTHER PTHR10231 UniProtKB/TrEMBL
  UDP-SUGAR TRANSPORTER PROTEIN SLC35A4-RELATED UniProtKB/TrEMBL
Pfam Nuc_sug_transp UniProtKB/TrEMBL
PIRSF UDP-gal_transpt UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt A0A0D9S9H2 ENTREZGENE, UniProtKB/TrEMBL