POU3F1 (POU class 3 homeobox 1) - Rat Genome Database

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Gene: POU3F1 (POU class 3 homeobox 1) Chlorocebus sabaeus
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Symbol: POU3F1
Name: POU class 3 homeobox 1
RGD ID: 18553099
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN epidermis development (ortholog); forebrain development (ortholog); glial cell differentiation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); rheumatoid arthritis (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: POU domain, class 3, transcription factor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12094,823,724 - 94,826,715 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2094,823,783 - 94,825,141 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603322,000,081 - 22,002,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POU3F1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12094,823,724 - 94,826,715 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2094,823,783 - 94,825,141 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603322,000,081 - 22,002,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
POU3F1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38138,043,829 - 38,046,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl138,043,829 - 38,046,793 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,509,501 - 38,512,465 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36138,282,110 - 38,285,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 34138,179,370 - 38,181,518NCBI
Celera136,788,160 - 36,791,086 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,628,084 - 36,630,296 (-)NCBIHuRef
CHM1_1138,625,220 - 38,628,147 (-)NCBICHM1_1
T2T-CHM13v2.0137,911,007 - 37,913,971 (-)NCBIT2T-CHM13v2.0
Pou3f1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,551,439 - 124,554,448 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,550,600 - 124,554,448 (+)EnsemblGRCm39 Ensembl
GRCm384124,657,646 - 124,660,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,656,807 - 124,660,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,334,889 - 124,337,899 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,159,956 - 124,161,473 (+)NCBIMGSCv36mm8
Celera4122,983,916 - 122,986,325 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.86NCBI
Pou3f1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,195,090 - 142,198,070 (+)NCBIGRCr8
mRatBN7.25136,910,391 - 136,913,371 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5136,910,391 - 136,913,371 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,613,780 - 139,616,760 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,383,791 - 141,386,771 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,390,973 - 141,393,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,643,599 - 142,646,580 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,643,599 - 142,646,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,414,652 - 146,417,633 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45143,981,547 - 143,984,527 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15143,991,539 - 143,994,520 (+)NCBI
Celera5135,433,883 - 135,436,881 (+)NCBICelera
Cytogenetic Map5q36NCBI
POU3F1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,792,247 - 188,795,216 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,921,407 - 187,924,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,317,800 - 37,320,004 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
POU3F1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,547,868 - 4,549,469 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,547,920 - 4,549,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha154,790,366 - 4,793,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,675,978 - 4,679,074 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,675,978 - 4,677,348 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,536,678 - 4,539,775 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,603,051 - 4,604,421 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,619,497 - 4,622,595 (+)NCBIUU_Cfam_GSD_1.0
POU3F1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl694,026,675 - 94,028,030 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1694,025,133 - 94,028,053 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2686,796,219 - 86,798,759 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pou3f1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,684,402 - 20,685,757 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,682,883 - 20,685,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 5 15
Low 15 3 29
Below cutoff 14 13 14

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007979319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000018400   ⟹   ENSCSAP00000017857
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2094,823,783 - 94,825,141 (+)Ensembl
RefSeq Acc Id: XM_007979319   ⟹   XP_007977510
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12094,823,724 - 94,826,715 (+)NCBI
Vero_WHO_p1.0NW_02366603322,000,081 - 22,002,282 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007977510 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017857
  ENSCSAP00000017857.1
RefSeq Acc Id: XP_007977510   ⟸   XM_007979319
- UniProtKB: A0A0D9SAG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017857   ⟸   ENSCSAT00000018400


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018400.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
  POU_dom UniProtKB/TrEMBL
  TF_POU_3 UniProtKB/TrEMBL
KEGG Report csab:103225077 UniProtKB/TrEMBL
NCBI Gene POU3F1 ENTREZGENE
PANTHER POU DOMAIN UniProtKB/TrEMBL
  POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  Pou UniProtKB/TrEMBL
PIRSF Transcription_factor_POU UniProtKB/TrEMBL
PRINTS POUDOMAIN UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_1 UniProtKB/TrEMBL
  POU_2 UniProtKB/TrEMBL
  POU_3 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A0D9SAG8 ENTREZGENE, UniProtKB/TrEMBL