MAGEB18 (MAGE family member B18) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MAGEB18 (MAGE family member B18) Chlorocebus sabaeus
Analyze
Symbol: MAGEB18
Name: MAGE family member B18
RGD ID: 18547190
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103231738; melanoma-associated antigen B18
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X24,611,324 - 24,614,095 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX24,612,338 - 24,613,372 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605626,511,366 - 26,513,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAGEB18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X24,611,324 - 24,614,095 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX24,612,338 - 24,613,372 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605626,511,366 - 26,513,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MAGEB18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X26,138,343 - 26,140,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX26,138,343 - 26,140,736 (+)EnsemblGRCh38hg38GRCh38
GRCh37X26,156,460 - 26,158,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X26,066,381 - 26,068,773 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX30,283,735 - 30,286,128 (+)NCBICelera
Cytogenetic MapXp21.3NCBI
HuRefX23,893,758 - 23,896,151 (+)NCBIHuRef
CHM1_1X26,188,119 - 26,190,512 (+)NCBICHM1_1
T2T-CHM13v2.0X25,725,680 - 25,728,073 (+)NCBIT2T-CHM13v2.0
Mageb18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X91,162,485 - 91,643,178 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX91,162,485 - 91,643,178 (-)EnsemblGRCm39 Ensembl
GRCm38X92,118,879 - 92,599,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX92,118,879 - 92,599,572 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X89,364,218 - 89,844,911 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X88,371,598 - 88,852,291 (-)NCBIMGSCv36mm8
CeleraX79,058,805 - 79,544,266 (-)NCBICelera
Cytogenetic MapXC2- C3NCBI
cM MapX40.62NCBI
Mageb18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X60,861,961 - 61,456,154 (-)NCBIGRCr8
mRatBN7.2X56,885,991 - 56,888,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX56,885,991 - 56,888,245 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX58,269,851 - 58,272,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X61,772,150 - 61,774,404 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X59,365,686 - 59,367,940 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X61,229,831 - 61,232,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX61,229,831 - 61,232,085 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X61,812,677 - 61,814,931 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X79,444,746 - 79,447,000 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX57,313,054 - 57,315,308 (-)NCBICelera
Cytogenetic MapXq22NCBI
LOC111094768
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X23,027,346 - 23,029,856 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX27,991,370 - 27,993,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X23,047,980 - 23,050,469 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X23,083,528 - 23,086,017 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X23,097,538 - 23,100,027 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X23,160,836 - 23,163,324 (+)NCBIUU_Cfam_GSD_1.0
LOC100737023
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX22,083,012 - 22,084,040 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X22,082,917 - 22,084,040 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X23,660,138 - 23,662,803 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system
High
Medium
Low 9
Below cutoff 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019631   ⟹   ENSCSAP00000019040
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX24,612,338 - 24,613,372 (+)Ensembl
RefSeq Acc Id: XM_037986615   ⟹   XP_037842543
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605626,511,366 - 26,513,725 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037842543 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019040.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000019040   ⟸   ENSCSAT00000019631
RefSeq Acc Id: XP_037842543   ⟸   XM_037986615
- UniProtKB: A0A0D9SDV1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019541 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019631.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
KEGG Report csab:103231738 UniProtKB/TrEMBL
NCBI Gene LOC103231738 ENTREZGENE
PANTHER MELANOMA-ASSOCIATED ANTIGEN B18 UniProtKB/TrEMBL
  PTHR11736 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
UniProt A0A0D9SDV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 MAGEB18  MAGE family member B18  LOC103231738  melanoma-associated antigen B18  Symbol and/or name change 5135510 APPROVED