BIN1 (bridging integrator 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: BIN1 (bridging integrator 1) Chlorocebus sabaeus
Analyze
Symbol: BIN1
Name: bridging integrator 1
RGD ID: 18547124
Description: ENCODES a protein that exhibits GTPase binding (ortholog); protein-containing complex binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN muscle cell differentiation (ortholog); positive regulation of endocytosis (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant thrombophilia due to protein C deficiency (ortholog); autosomal recessive centronuclear myopathy (ortholog); FOUND IN axon initial segment (ortholog); axon terminus (ortholog); cerebellar mossy fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myc box-dependent-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,112,605 - 3,173,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl103,113,868 - 3,173,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,802 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,112,605 - 3,173,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl103,113,868 - 3,173,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,802 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,048,023 - 127,107,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,048,027 - 127,107,288 (-)EnsemblGRCh38hg38GRCh38
GRCh372127,805,599 - 127,864,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,522,077 - 127,581,334 (-)NCBINCBI36Build 36hg18NCBI36
Build 342127,521,838 - 127,581,094NCBI
Celera2121,117,653 - 121,176,919 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2120,113,344 - 120,172,651 (-)NCBIHuRef
CHM1_12127,809,107 - 127,868,406 (-)NCBICHM1_1
T2T-CHM13v2.02127,482,408 - 127,541,545 (-)NCBIT2T-CHM13v2.0
Bin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,509,671 - 32,568,793 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1832,510,283 - 32,568,790 (+)EnsemblGRCm39 Ensembl
GRCm381832,376,618 - 32,435,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1832,377,230 - 32,435,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371832,536,871 - 32,595,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361832,520,267 - 32,578,741 (+)NCBIMGSCv36mm8
Celera1832,859,551 - 32,918,381 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.01NCBI
Bin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81824,282,840 - 24,341,461 (+)NCBIGRCr8
mRatBN7.21824,009,731 - 24,067,267 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,009,653 - 24,067,263 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,137,876 - 24,195,311 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01824,896,662 - 24,953,442 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01824,232,875 - 24,290,326 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,163,575 - 25,222,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,163,561 - 25,222,135 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,878,678 - 24,937,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,813,407 - 24,872,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11824,840,052 - 24,899,497 (+)NCBI
Celera1823,761,867 - 23,818,116 (+)NCBICelera
Cytogenetic Map18p12NCBI
Bin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554593,376,149 - 3,423,157 (+)NCBIChiLan1.0ChiLan1.0
BIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21348,536,717 - 48,596,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B48,551,951 - 48,611,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B33,168,767 - 33,228,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B127,716,543 - 127,775,378 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B127,716,550 - 127,775,378 (-)Ensemblpanpan1.1panPan2
BIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11923,503,934 - 23,534,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1923,375,363 - 23,534,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1923,722,237 - 23,775,092 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01924,808,041 - 24,860,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1924,807,994 - 24,860,791 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11923,511,306 - 23,564,134 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01923,700,703 - 23,753,544 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01924,831,980 - 24,884,833 (+)NCBIUU_Cfam_GSD_1.0
Bin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530397,432,383 - 97,489,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646944,127,970 - 44,185,246 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646944,128,308 - 44,185,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1525,328,674 - 25,383,652 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11525,328,679 - 25,379,675 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21529,008,956 - 29,057,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Bin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473213,544,507 - 13,592,795 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473213,543,975 - 13,592,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 16 60
Low 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007964621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007964637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000014912   ⟹   ENSCSAP00000012870
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl103,113,868 - 3,173,620 (+)Ensembl
RefSeq Acc Id: XM_007964621   ⟹   XP_007962812
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,592 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964623   ⟹   XP_007962814
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,139,406 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,597,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964624   ⟹   XP_007962815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,596 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964625   ⟹   XP_007962816
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,595 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964626   ⟹   XP_007962817
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,139,414 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,597,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964628   ⟹   XP_007962819
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,601 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964629   ⟹   XP_007962820
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,598 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964630   ⟹   XP_007962821
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,596 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964631   ⟹   XP_007962822
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,598 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964632   ⟹   XP_007962823
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,605 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964633   ⟹   XP_007962824
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,603 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964634   ⟹   XP_007962825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,600 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964635   ⟹   XP_007962826
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,601 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964636   ⟹   XP_007962827
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,607 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964637   ⟹   XP_007962828
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1103,113,608 - 3,173,522 (+)NCBI
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037988119   ⟹   XP_037844047
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606119,562,554 - 19,597,242 (-)NCBI
RefSeq Acc Id: XM_037988120   ⟹   XP_037844048
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606119,562,554 - 19,597,242 (-)NCBI
RefSeq Acc Id: XP_007962812   ⟸   XM_007964621
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962816   ⟸   XM_007964625
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962821   ⟸   XM_007964630
- Peptide Label: isoform X8
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962815   ⟸   XM_007964624
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962820   ⟸   XM_007964629
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962822   ⟸   XM_007964631
- Peptide Label: isoform X9
RefSeq Acc Id: XP_007962825   ⟸   XM_007964634
- Peptide Label: isoform X12
RefSeq Acc Id: XP_007962826   ⟸   XM_007964635
- Peptide Label: isoform X13
RefSeq Acc Id: XP_007962819   ⟸   XM_007964628
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962824   ⟸   XM_007964633
- Peptide Label: isoform X11
RefSeq Acc Id: XP_007962823   ⟸   XM_007964632
- Peptide Label: isoform X10
RefSeq Acc Id: XP_007962827   ⟸   XM_007964636
- Peptide Label: isoform X14
RefSeq Acc Id: XP_007962828   ⟸   XM_007964637
- Peptide Label: isoform X16
RefSeq Acc Id: XP_007962814   ⟸   XM_007964623
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962817   ⟸   XM_007964626
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012870   ⟸   ENSCSAT00000014912
RefSeq Acc Id: XP_037844048   ⟸   XM_037988120
- Peptide Label: isoform X17
RefSeq Acc Id: XP_037844047   ⟸   XM_037988119
- Peptide Label: isoform X15


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014912.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  Amphiphysin UniProtKB/TrEMBL
  Amphiphysin-2_SH3 UniProtKB/TrEMBL
  Amphiphysin_2 UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene BIN1 ENTREZGENE
PANTHER AMPHIPHYSIN UniProtKB/TrEMBL
  PTHR46514:SF4 UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS AMPHIPHYSIN UniProtKB/TrEMBL
  AMPHIPHYSIN2 UniProtKB/TrEMBL
PROSITE BAR UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART BAR UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A0D9RW81 ENTREZGENE, UniProtKB/TrEMBL