OTOF (otoferlin) - Rat Genome Database

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Gene: OTOF (otoferlin) Chlorocebus sabaeus
Analyze
Symbol: OTOF
Name: otoferlin
RGD ID: 18546426
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cochlea development (ortholog); synaptic vesicle exocytosis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Arthrogryposis and Ectodermal Dysplasia (ortholog); Auditory Neuropathy (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN apical part of cell (ortholog); basal part of cell (ortholog); cochlear hair cell ribbon synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,080,077 - 81,187,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,080,462 - 81,186,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,964,395 - 31,067,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OTOF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,080,077 - 81,187,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,080,462 - 81,186,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,964,395 - 31,067,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OTOF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,457,203 - 26,558,756 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,457,203 - 26,558,756 (-)EnsemblGRCh38hg38GRCh38
GRCh37226,680,071 - 26,781,624 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,533,575 - 26,635,070 (-)NCBINCBI36Build 36hg18NCBI36
Build 34226,591,722 - 26,612,561NCBI
Celera226,523,620 - 26,625,188 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,419,277 - 26,520,993 (-)NCBIHuRef
CHM1_1226,610,235 - 26,711,604 (-)NCBICHM1_1
T2T-CHM13v2.0226,495,826 - 26,597,899 (-)NCBIT2T-CHM13v2.0
Otof
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,524,410 - 30,620,073 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,524,406 - 30,619,276 (-)EnsemblGRCm39 Ensembl
GRCm38530,367,066 - 30,462,730 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,367,062 - 30,461,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv37530,669,351 - 30,764,305 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,646,656 - 30,738,483 (-)NCBIMGSCv36mm8
Celera527,843,111 - 27,940,114 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.48NCBI
Otof
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,647,869 - 31,744,476 (+)NCBIGRCr8
mRatBN7.2625,928,018 - 26,024,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,928,055 - 26,024,631 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,220,691 - 26,317,263 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,536,572 - 26,633,146 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,015,517 - 26,112,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,328,343 - 27,424,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,328,406 - 27,424,864 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,140,727 - 37,237,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,912,607 - 26,008,137 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1626,003,001 - 26,007,276 (+)NCBI
Celera625,406,310 - 25,502,501 (+)NCBICelera
Cytogenetic Map6q14NCBI
Otof
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,481,231 - 8,569,265 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,480,099 - 8,569,215 (-)NCBIChiLan1.0ChiLan1.0
OTOF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,958,484 - 100,060,125 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,962,451 - 100,064,093 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,454,010 - 26,555,642 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,548,972 - 26,566,606 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,546,959 - 26,647,278 (-)Ensemblpanpan1.1panPan2
OTOF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,518,480 - 20,619,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,518,813 - 20,614,750 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,413,288 - 20,519,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,840,616 - 21,054,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,841,059 - 20,936,337 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,527,360 - 20,741,118 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,538,522 - 20,752,482 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,584,774 - 20,680,568 (-)NCBIUU_Cfam_GSD_1.0
Otof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,839,059 - 64,923,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,916,113 - 5,999,784 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,916,113 - 5,999,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTOF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,478,027 - 112,581,104 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,478,188 - 112,581,105 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,511,861 - 119,546,848 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Otof
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,599,544 - 8,690,412 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,599,815 - 8,690,382 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19
Low 13 21
Below cutoff 18 4 18

Sequence


RefSeq Acc Id: ENSCSAT00000006847   ⟹   ENSCSAP00000005040
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1481,080,462 - 81,186,697 (+)Ensembl
RefSeq Acc Id: XM_007971214   ⟹   XP_007969405
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11481,080,079 - 81,186,618 (+)NCBI
Vero_WHO_p1.0NW_02366604530,965,310 - 31,067,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971215   ⟹   XP_007969406
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11481,080,078 - 81,186,713 (+)NCBI
Vero_WHO_p1.0NW_02366604530,964,395 - 31,067,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971218   ⟹   XP_007969409
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11481,080,077 - 81,186,711 (+)NCBI
Vero_WHO_p1.0NW_02366604530,964,395 - 31,067,698 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038006673   ⟹   XP_037862601
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604530,966,885 - 31,067,459 (-)NCBI
RefSeq Acc Id: XM_038006674   ⟹   XP_037862602
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604530,965,227 - 31,067,698 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007969405 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969406 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969409 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862601 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862602 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005040.1
RefSeq Acc Id: XP_007969409   ⟸   XM_007971218
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R8V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969406   ⟸   XM_007971215
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R8V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969405   ⟸   XM_007971214
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R8V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000005040   ⟸   ENSCSAT00000006847
RefSeq Acc Id: XP_037862602   ⟸   XM_038006674
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R8V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037862601   ⟸   XM_038006673
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R8V1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009067 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006847.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2A_Ferlin UniProtKB/TrEMBL
  C2B_Ferlin UniProtKB/TrEMBL
  C2C_Ferlin UniProtKB/TrEMBL
  C2D_Ferlin UniProtKB/TrEMBL
  C2E_Ferlin UniProtKB/TrEMBL
  C2F_Ferlin UniProtKB/TrEMBL
  FerIin_dom UniProtKB/TrEMBL
  Ferlin UniProtKB/TrEMBL
  Ferlin_B-domain UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
NCBI Gene OTOF ENTREZGENE
PANTHER PTHR12546 UniProtKB/TrEMBL
  PTHR12546:SF32 UniProtKB/TrEMBL
Pfam FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0D9R8V1 ENTREZGENE, UniProtKB/TrEMBL