ADGRF1 (adhesion G protein-coupled receptor F1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ADGRF1 (adhesion G protein-coupled receptor F1) Chlorocebus sabaeus
Analyze
Symbol: ADGRF1
Name: adhesion G protein-coupled receptor F1
RGD ID: 18543061
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); transmembrane signaling receptor activity (inferred); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); memory (ortholog); neuron projection development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adhesion G-protein coupled receptor F1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11725,236,855 - 25,279,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1725,237,852 - 25,273,087 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604447,017,749 - 47,049,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADGRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11725,236,855 - 25,279,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1725,237,852 - 25,273,087 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604447,017,749 - 47,049,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ADGRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38646,997,708 - 47,042,332 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl646,997,708 - 47,042,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37646,965,445 - 47,010,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36647,075,772 - 47,118,041 (-)NCBINCBI36Build 36hg18NCBI36
Build 34647,075,917 - 47,094,194NCBI
Celera648,520,157 - 48,562,426 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef646,690,703 - 46,732,981 (-)NCBIHuRef
CHM1_1646,971,042 - 47,013,305 (-)NCBICHM1_1
T2T-CHM13v2.0646,835,188 - 46,879,812 (-)NCBIT2T-CHM13v2.0
Adgrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391743,581,174 - 43,636,767 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1743,581,220 - 43,635,628 (+)EnsemblGRCm39 Ensembl
GRCm381743,270,283 - 43,325,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1743,270,329 - 43,324,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371743,407,296 - 43,461,355 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361742,735,601 - 42,789,388 (+)NCBIMGSCv36mm8
Celera1746,686,960 - 46,746,176 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1719.71NCBI
Adgrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8925,158,198 - 25,210,744 (-)NCBIGRCr8
mRatBN7.2917,661,258 - 17,696,359 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl917,660,930 - 17,711,704 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0920,343,730 - 20,378,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0919,202,510 - 19,318,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,359,998 - 13,419,131 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,358,106 - 13,416,371 (-)NCBI
Celera915,370,906 - 15,421,796 (-)NCBICelera
Cytogenetic Map9q13NCBI
Adgrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,744,342 - 11,772,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543711,744,387 - 11,772,260 (-)NCBIChiLan1.0ChiLan1.0
ADGRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2561,495,623 - 61,540,289 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1657,361,859 - 57,406,528 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0646,583,013 - 46,627,663 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1647,848,040 - 47,892,695 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl647,848,040 - 47,892,912 (-)Ensemblpanpan1.1panPan2
ADGRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11215,149,254 - 15,283,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1215,150,543 - 15,204,300 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1215,181,601 - 15,315,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01215,646,559 - 15,741,910 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1215,648,211 - 15,702,592 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11215,161,203 - 15,256,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01215,254,178 - 15,349,786 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01215,400,749 - 15,534,732 (-)NCBIUU_Cfam_GSD_1.0
Adgrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494650,586,577 - 50,612,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647613,358,096 - 13,374,819 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647613,339,985 - 13,373,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl741,806,393 - 41,853,657 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1741,806,385 - 41,853,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,466,209 - 48,497,395 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Adgrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475413,722,457 - 13,751,378 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475413,722,528 - 13,749,892 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 8 12 7
Below cutoff 16 6 16

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010717   ⟹   ENSCSAP00000008805
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1725,237,852 - 25,273,087 (+)Ensembl
RefSeq Acc Id: XM_038005670   ⟹   XP_037861598
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604447,017,749 - 47,049,257 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037861598 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008805.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000008805   ⟸   ENSCSAT00000010717
RefSeq Acc Id: XP_037861598   ⟸   XM_038005670
- UniProtKB: A0A0D9RJL6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010717.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.610 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_Ig-hepta-like_rcpt UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  SEA_dom UniProtKB/TrEMBL
  SEA_dom_sf UniProtKB/TrEMBL
NCBI Gene ADGRF1 ENTREZGENE
PANTHER ADHESION G-PROTEIN COUPLED RECEPTOR F1 UniProtKB/TrEMBL
  PTHR45813 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
PRINTS GPCRSECRETIN UniProtKB/TrEMBL
  IGHEPTARCPTR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
SMART GPS UniProtKB/TrEMBL
Superfamily-SCOP SSF82671 UniProtKB/TrEMBL
UniProt A0A0D9RJL6 ENTREZGENE, UniProtKB/TrEMBL