ARL15 (ADP ribosylation factor like GTPase 15) - Rat Genome Database

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Gene: ARL15 (ADP ribosylation factor like GTPase 15) Chlorocebus sabaeus
Analyze
Symbol: ARL15
Name: ADP ribosylation factor like GTPase 15
RGD ID: 18541854
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1450,166,070 - 50,597,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl450,394,750 - 50,596,357 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666082480,968 - 946,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ARL15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1450,166,070 - 50,597,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl450,394,750 - 50,596,357 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666082480,968 - 946,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARL15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38553,883,942 - 54,310,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl553,883,942 - 54,310,582 (-)EnsemblGRCh38hg38GRCh38
GRCh37553,179,772 - 53,606,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36553,216,371 - 53,642,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 34553,216,370 - 53,642,160NCBI
Celera550,134,233 - 50,560,002 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef550,152,974 - 50,579,969 (-)NCBIHuRef
CHM1_1553,183,125 - 53,608,908 (-)NCBICHM1_1
T2T-CHM13v2.0554,711,445 - 55,138,165 (-)NCBIT2T-CHM13v2.0
Arl15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,929,963 - 114,293,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,931,041 - 114,293,997 (+)EnsemblGRCm39 Ensembl
GRCm3813113,794,506 - 114,157,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,794,505 - 114,157,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713114,584,716 - 114,947,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,915,437 - 115,278,307 (+)NCBIMGSCv36mm8
Celera13118,116,654 - 118,483,898 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.02NCBI
Arl15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8247,171,377 - 47,555,666 (+)NCBIGRCr8
mRatBN7.2245,438,221 - 45,822,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl245,438,242 - 45,822,559 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx252,543,643 - 52,926,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0250,601,955 - 50,984,607 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0245,482,659 - 45,866,078 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0245,668,852 - 46,053,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl245,668,969 - 46,050,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0264,809,720 - 65,083,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4245,450,287 - 45,706,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera241,201,703 - 41,583,459 (+)NCBICelera
Cytogenetic Map2q14NCBI
Arl15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544613,239,300 - 13,630,593 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544613,239,180 - 13,633,141 (+)NCBIChiLan1.0ChiLan1.0
ARL15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2459,625,223 - 60,057,052 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1557,778,869 - 58,214,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0559,713,355 - 60,145,518 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1561,334,731 - 61,766,431 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl561,334,842 - 61,764,635 (+)Ensemblpanpan1.1panPan2
ARL15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1461,090,021 - 61,486,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl461,090,096 - 61,484,273 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha460,855,589 - 61,252,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0461,581,399 - 61,979,976 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl461,581,425 - 61,979,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1461,360,020 - 61,757,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0461,487,236 - 61,885,716 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0462,006,205 - 62,402,494 (+)NCBIUU_Cfam_GSD_1.0
Arl15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213204,358,753 - 204,753,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648013,295,228 - 13,690,487 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648013,295,255 - 13,690,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1633,341,812 - 33,524,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11633,122,591 - 33,575,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21635,128,855 - 35,579,625 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Arl15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247595,097,398 - 5,495,792 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247595,097,016 - 5,495,834 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 8
Low 36 20 52
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014707   ⟹   ENSCSAP00000012671
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl450,394,750 - 50,596,357 (-)Ensembl
RefSeq Acc Id: XM_007972273   ⟹   XP_007970464
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1450,166,070 - 50,569,196 (-)NCBI
Vero_WHO_p1.0NW_023666082507,841 - 946,746 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007972278   ⟹   XP_007970469
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1450,166,070 - 50,596,526 (-)NCBI
Vero_WHO_p1.0NW_023666082480,968 - 946,746 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037994657   ⟹   XP_037850585
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666082591,298 - 946,746 (+)NCBI
RefSeq Acc Id: XM_037994658   ⟹   XP_037850586
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666082481,037 - 946,746 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007970464 (Get FASTA)   NCBI Sequence Viewer  
  XP_007970469 (Get FASTA)   NCBI Sequence Viewer  
  XP_037850585 (Get FASTA)   NCBI Sequence Viewer  
  XP_037850586 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012671.1
Reference Protein Sequences
RefSeq Acc Id: XP_007970469   ⟸   XM_007972278
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007970464   ⟸   XM_007972273
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000012671   ⟸   ENSCSAT00000014707
RefSeq Acc Id: XP_037850586   ⟸   XM_037994658
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037850585   ⟸   XM_037994657
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014707.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene ARL15 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15 UniProtKB/TrEMBL
  PTHR46693 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RVN2_CHLSB UniProtKB/TrEMBL