ASB7 (ankyrin repeat and SOCS box containing 7) - Rat Genome Database

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Gene: ASB7 (ankyrin repeat and SOCS box containing 7) Chlorocebus sabaeus
Analyze
Symbol: ASB7
Name: ankyrin repeat and SOCS box containing 7
RGD ID: 18539724
Description: ENCODES a protein that exhibits transcription cis-regulatory region binding (inferred); INVOLVED IN intracellular signal transduction (inferred); positive regulation of transcription by RNA polymerase II (inferred); protein ubiquitination (inferred); ASSOCIATED WITH chromosome 15q26-qter deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and SOCS box protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,065,756 - 19,115,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,075,293 - 19,115,216 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605927,428,775 - 27,478,213 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ASB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,065,756 - 19,115,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,075,293 - 19,115,216 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605927,428,775 - 27,478,213 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ASB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815100,602,589 - 100,651,701 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15100,602,589 - 100,651,701 (+)EnsemblGRCh38hg38GRCh38
GRCh3715101,142,794 - 101,191,906 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,960,358 - 99,007,174 (+)NCBINCBI36Build 36hg18NCBI36
Celera1577,556,003 - 77,605,160 (+)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,264,124 - 77,313,303 (+)NCBIHuRef
CHM1_115100,983,741 - 101,032,887 (+)NCBICHM1_1
T2T-CHM13v2.01598,357,248 - 98,406,286 (+)NCBIT2T-CHM13v2.0
Asb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,294,220 - 66,339,601 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,294,313 - 66,339,344 (-)EnsemblGRCm39 Ensembl
GRCm38766,644,565 - 66,689,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,644,565 - 66,689,596 (-)EnsemblGRCm38mm10GRCm38
MGSCv37773,789,451 - 73,834,447 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36766,526,736 - 66,568,424 (-)NCBIMGSCv36mm8
Celera764,094,087 - 64,139,864 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.03NCBI
Asb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,621,462 - 129,677,788 (-)NCBIGRCr8
mRatBN7.21120,222,835 - 120,267,411 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,222,745 - 120,267,282 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,223,699 - 128,265,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,395,133 - 135,436,728 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,199,488 - 128,240,900 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,545,671 - 127,599,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,554,785 - 127,599,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,623,601 - 128,674,470 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41121,091,586 - 121,142,773 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11121,179,169 - 121,210,981 (-)NCBI
Celera1112,419,585 - 112,470,051 (-)NCBICelera
Cytogenetic Map1q22NCBI
Asb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,610,011 - 27,649,356 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541627,610,011 - 27,649,186 (+)NCBIChiLan1.0ChiLan1.0
ASB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,194,669 - 90,243,989 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11593,894,996 - 93,944,336 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,328,868 - 79,378,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11598,616,797 - 98,734,650 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1598,616,797 - 98,666,094 (+)Ensemblpanpan1.1panPan2
ASB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,365,515 - 40,415,345 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,320,391 - 40,414,671 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha343,056,940 - 43,106,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0340,765,981 - 40,815,813 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,765,986 - 40,815,776 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,299,788 - 40,349,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0340,530,394 - 40,580,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,737,640 - 40,787,467 (-)NCBIUU_Cfam_GSD_1.0
Asb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,128,581 - 143,165,827 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364833,168,137 - 3,205,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364833,165,577 - 3,205,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,191,572 - 139,240,185 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11139,191,407 - 139,240,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,395,977 - 155,444,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Asb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,083,190 - 4,122,705 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247684,083,278 - 4,122,706 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 2 13
Low 34 20 47
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007990571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000014960   ⟹   ENSCSAP00000012916
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2919,075,293 - 19,115,216 (+)Ensembl
RefSeq Acc Id: XM_007990571   ⟹   XP_007988762
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12919,065,756 - 19,115,156 (+)NCBI
Vero_WHO_p1.0NW_02366605927,428,775 - 27,478,213 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988762 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012916
  ENSCSAP00000012916.1
Reference Protein Sequences
RefSeq Acc Id: XP_007988762   ⟸   XM_007990571
- UniProtKB: A0A0D9RWC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012916   ⟸   ENSCSAT00000014960


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014960.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB7_SOCS UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
  SOCS_box-like_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103231280 UniProtKB/TrEMBL
NCBI Gene ASB7 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN REPEAT PROTEIN UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A0D9RWC7 ENTREZGENE, UniProtKB/TrEMBL