MYO9B (myosin IXB) - Rat Genome Database

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Gene: MYO9B (myosin IXB) Chlorocebus sabaeus
Analyze
Symbol: MYO9B
Name: myosin IXB
RGD ID: 18536286
Description: ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ADP binding (ortholog); INVOLVED IN ARF protein signal transduction (ortholog); establishment of cell polarity (ortholog); lamellipodium morphogenesis (ortholog); ASSOCIATED WITH celiac disease (ortholog); Familial Prostate Cancer (ortholog); genetic disease (ortholog); FOUND IN actin filament (ortholog); filopodium tip (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unconventional myosin-IXb
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,571,276 - 15,707,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,596,583 - 15,707,567 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,725,513 - 3,862,680 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MYO9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,571,276 - 15,707,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,596,583 - 15,707,567 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,725,513 - 3,862,680 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MYO9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,075,777 - 17,213,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,075,777 - 17,214,537 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,186,587 - 17,324,095 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,073,528 - 17,185,104 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,073,527 - 17,185,103NCBI
Celera1917,088,108 - 17,225,623 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,754,814 - 16,891,543 (+)NCBIHuRef
CHM1_11917,186,170 - 17,323,621 (+)NCBICHM1_1
T2T-CHM13v2.01917,210,700 - 17,348,159 (+)NCBIT2T-CHM13v2.0
Myo9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,725,220 - 71,813,357 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,725,358 - 71,813,357 (+)EnsemblGRCm39 Ensembl
GRCm38871,272,576 - 71,360,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,272,714 - 71,360,713 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,796,613 - 73,884,611 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,201,723 - 74,289,702 (+)NCBIMGSCv36mm8
Celera873,795,997 - 73,883,793 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Myo9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,979,374 - 18,064,100 (+)NCBIGRCr8
mRatBN7.21617,945,379 - 18,030,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,945,448 - 18,030,126 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,996,794 - 18,081,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,129,704 - 19,214,292 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,049,715 - 18,134,438 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,669,373 - 19,754,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,529,497 - 19,614,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,434,261 - 18,519,220 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,434,258 - 18,519,218 (+)NCBI
Celera1618,153,160 - 18,237,714 (+)NCBICelera
RH 3.4 Map16194.32RGD
Cytogenetic Map16p14NCBI
Myo9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524974,844 - 1,024,311 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524973,576 - 1,024,351 (-)NCBIChiLan1.0ChiLan1.0
MYO9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,945,690 - 22,084,725 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,952,396 - 21,090,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,563,005 - 16,700,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,648,078 - 17,675,265 (+)NCBIpanpan1.1PanPan1.1panPan2
MYO9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,512,286 - 45,582,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,512,276 - 45,582,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,425,567 - 45,514,804 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,998,435 - 46,087,703 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,998,447 - 46,087,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,235,049 - 45,324,280 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,644,898 - 45,734,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,920,708 - 46,010,162 (-)NCBIUU_Cfam_GSD_1.0
Myo9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,068,547 - 204,148,216 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,618,659 - 3,697,277 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,617,680 - 3,697,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,455,607 - 60,567,467 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,455,605 - 60,567,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,972,826 - 60,077,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Myo9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908690,153 - 740,502 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908689,373 - 751,851 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 14 32
Low 6 28
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000003702   ⟹   ENSCSAP00000001975
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl615,596,583 - 15,707,567 (+)Ensembl
RefSeq Acc Id: XM_007995676   ⟹   XP_007993867
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1615,571,276 - 15,707,571 (+)NCBI
Vero_WHO_p1.0NW_0236660743,725,513 - 3,862,680 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993867 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001975.1
Reference Protein Sequences
RefSeq Acc Id: XP_007993867   ⟸   XM_007995676
- UniProtKB: A0A0D9R036 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001975   ⟸   ENSCSAT00000003702


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005666 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003702.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.20.240.20 UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  Myo9 UniProtKB/TrEMBL
  MYO9B UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/TrEMBL
  MYSc_Myo9 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  RA_Myosin-IXb UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene MYO9B ENTREZGENE
PANTHER PTHR46184:SF2 UniProtKB/TrEMBL
  UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/TrEMBL
  PF00612 UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
PRINTS MYOSINHEAVY UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART MYSc UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP SSF48350 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A0D9R036 ENTREZGENE, UniProtKB/TrEMBL