TBXAS1 (thromboxane A synthase 1) - Rat Genome Database

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Gene: TBXAS1 (thromboxane A synthase 1) Chlorocebus sabaeus
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Symbol: TBXAS1
Name: thromboxane A synthase 1
RGD ID: 18534205
Description: ENCODES a protein that exhibits heme binding (inferred); hydroperoxy icosatetraenoate dehydratase activity (inferred); iron ion binding (inferred); INVOLVED IN intracellular chloride ion homeostasis (ortholog); positive regulation of vasoconstriction (ortholog); response to ethanol (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Alcoholic Liver Diseases (ortholog); arteriosclerosis (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thromboxane-A synthase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121108,584,458 - 108,779,357 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21108,628,570 - 108,779,163 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660725,240,087 - 5,435,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TBXAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121108,584,458 - 108,779,357 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21108,628,570 - 108,779,163 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660725,240,087 - 5,435,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TBXAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,778,242 - 140,020,293 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,777,051 - 140,020,325 (+)EnsemblGRCh38hg38GRCh38
GRCh377139,478,041 - 139,720,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367139,175,421 - 139,366,471 (+)NCBINCBI36Build 36hg18NCBI36
Build 347138,982,135 - 139,173,186NCBI
Celera7134,200,105 - 134,441,970 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,772,488 - 134,013,944 (+)NCBIHuRef
CHM1_17139,412,286 - 139,654,615 (+)NCBICHM1_1
T2T-CHM13v2.07141,091,534 - 141,333,885 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,807,008 - 139,048,964 (+)NCBI
Tbxas1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,817,897 - 39,061,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,852,338 - 39,061,519 (+)EnsemblGRCm39 Ensembl
GRCm38638,864,159 - 39,084,590 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,875,404 - 39,084,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,868,985 - 39,034,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,848,593 - 39,014,186 (+)NCBIMGSCv36mm8
Celera638,900,560 - 39,068,678 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.85NCBI
Tbxas1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,631,841 - 68,803,959 (+)NCBIGRCr8
mRatBN7.2467,664,963 - 67,837,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,665,007 - 67,837,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,601,545 - 72,761,480 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0468,522,641 - 68,682,583 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,919,149 - 67,090,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,624,181 - 66,846,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,670,618 - 66,846,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0466,481,238 - 66,651,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4466,502,253 - 66,677,538 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1466,778,382 - 66,953,668 (+)NCBI
Celera462,678,426 - 62,850,218 (+)NCBICelera
Cytogenetic Map4q23NCBI
Tbxas1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,160,653 - 3,334,411 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBIChiLan1.0ChiLan1.0
TBXAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,628,283 - 176,813,856 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,638,540 - 28,824,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,772,947 - 131,958,647 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17144,255,211 - 144,439,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7144,255,211 - 144,439,523 (+)Ensemblpanpan1.1panPan2
TBXAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1168,870,283 - 9,032,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl168,870,284 - 9,023,462 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,713,633 - 9,875,421 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0168,790,596 - 8,952,392 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl168,790,601 - 8,943,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1168,741,298 - 8,903,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0168,585,677 - 8,747,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0168,654,393 - 8,816,178 (-)NCBIUU_Cfam_GSD_1.0
Tbxas1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511815,026,973 - 15,181,690 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365924,038,074 - 4,192,808 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365924,038,163 - 4,192,772 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBXAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl189,717,294 - 9,886,681 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1189,717,291 - 9,886,699 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,223,765 - 10,394,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tbxas1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476520,146,138 - 20,315,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476520,145,769 - 20,314,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006340   ⟹   ENSCSAP00000004547
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl21108,628,570 - 108,779,163 (+)Ensembl
RefSeq Acc Id: XM_007983129   ⟹   XP_007981320
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121108,584,505 - 108,779,357 (+)NCBI
Vero_WHO_p1.0NW_0236660725,240,087 - 5,435,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037991157   ⟹   XP_037847085
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660725,240,105 - 5,435,240 (+)NCBI
RefSeq Acc Id: XM_037991158   ⟹   XP_037847086
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660725,240,194 - 5,324,972 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007981320 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847085 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847086 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004547.1
RefSeq Acc Id: XP_007981320   ⟸   XM_007983129
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R7F8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004547   ⟸   ENSCSAT00000006340
RefSeq Acc Id: XP_037847085   ⟸   XM_037991157
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R7F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847086   ⟸   XM_037991158
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006340.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene TBXAS1 ENTREZGENE
PANTHER THROMBOXANE-A SYNTHASE UniProtKB/TrEMBL
  THROMBOXANE-A SYNTHASE UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A0D9R7F8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83417 ENTREZGENE