CADPS2 (calcium dependent secretion activator 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CADPS2 (calcium dependent secretion activator 2) Chlorocebus sabaeus
Analyze
Symbol: CADPS2
Name: calcium dependent secretion activator 2
RGD ID: 18533140
Description: INVOLVED IN cellular response to starvation (ortholog); hematopoietic stem cell homeostasis (ortholog); positive regulation of exocytosis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN glutamatergic synapse (ortholog); parallel fiber to Purkinje cell synapse (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-dependent secretion activator 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12191,117,749 - 91,669,284 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604211,821,174 - 12,425,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CADPS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12191,117,749 - 91,669,284 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604211,821,174 - 12,425,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CADPS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387122,318,411 - 122,886,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7122,318,411 - 122,886,759 (-)EnsemblGRCh38hg38GRCh38
GRCh377121,958,465 - 122,526,514 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367121,745,714 - 122,313,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 347121,553,403 - 122,120,465NCBI
Celera7116,762,799 - 117,331,572 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7116,321,864 - 116,889,045 (-)NCBIHuRef
CHM1_17121,891,856 - 122,459,852 (-)NCBICHM1_1
T2T-CHM13v2.07123,634,402 - 124,203,026 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27121,353,164 - 121,915,693 (-)NCBI
Cadps2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39623,262,765 - 23,840,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl623,262,772 - 23,839,420 (-)EnsemblGRCm39 Ensembl
GRCm38623,262,773 - 23,841,175 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl623,262,773 - 23,839,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv37623,212,838 - 23,789,300 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36623,212,839 - 23,789,139 (-)NCBIMGSCv36mm8
Celera623,306,392 - 23,862,052 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map610.57NCBI
Cadps2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8452,746,054 - 53,275,252 (-)NCBIGRCr8
mRatBN7.2451,780,415 - 52,309,641 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl451,781,053 - 52,309,829 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0450,326,447 - 50,861,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl450,326,442 - 50,860,756 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0450,109,220 - 50,640,613 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4449,658,535 - 50,206,014 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera446,974,764 - 47,500,739 (-)NCBICelera
Cytogenetic Map4q22NCBI
Cadps2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,961,731 - 4,485,710 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554793,961,877 - 4,485,710 (-)NCBIChiLan1.0ChiLan1.0
CADPS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26159,190,582 - 159,757,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1711,200,836 - 11,767,539 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07114,328,933 - 114,896,388 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17127,013,043 - 127,579,665 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7127,014,772 - 127,579,249 (-)Ensemblpanpan1.1panPan2
CADPS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11460,109,253 - 60,465,982 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1460,107,538 - 60,556,817 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1459,530,071 - 59,982,436 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01460,148,277 - 60,601,897 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1460,146,547 - 60,602,286 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11460,238,319 - 60,691,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01459,866,769 - 60,319,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01460,244,197 - 60,696,999 (-)NCBIUU_Cfam_GSD_1.0
Cadps2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511849,191,231 - 49,699,089 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366052,505,231 - 3,011,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366052,505,064 - 3,012,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CADPS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1824,372,544 - 24,867,482 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11824,372,547 - 24,867,287 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,969,731 - 26,464,337 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cadps2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478313,142,198 - 13,700,683 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478313,142,036 - 13,701,430 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038004433   ⟹   XP_037860361
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604211,821,174 - 12,425,811 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037860361 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006546.1
RefSeq Acc Id: XP_037860361   ⟸   XM_038004433
- UniProtKB: A0A0D9RD57 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010492 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008401.1 UniProtKB/TrEMBL
Gene3D-CATH Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  CAPS UniProtKB/TrEMBL
  MUN_dom UniProtKB/TrEMBL
  Munc13_1 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene CADPS2 ENTREZGENE
PANTHER CALCIUM-DEPENDENT SECRETION ACTIVATOR UniProtKB/TrEMBL
  CALCIUM-DEPENDENT SECRETION ACTIVATOR 2 UniProtKB/TrEMBL
Pfam MUN UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PROSITE MHD1 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
SMART DUF1041 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP C2 domain (Calcium/lipid-binding domain, CaLB) UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0A0D9RD57 ENTREZGENE, UniProtKB/TrEMBL