ZNF248 (zinc finger protein 248) - Rat Genome Database

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Gene: ZNF248 (zinc finger protein 248) Chlorocebus sabaeus
Analyze
Symbol: ZNF248
Name: zinc finger protein 248
RGD ID: 18532595
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1938,083,505 - 38,180,325 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,165 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF248
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1938,083,505 - 38,180,325 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,165 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF248
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381037,758,538 - 37,858,103 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1037,776,526 - 37,858,106 (-)EnsemblGRCh38hg38GRCh38
GRCh371038,047,466 - 38,147,031 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361038,157,905 - 38,186,492 (-)NCBINCBI36Build 36hg18NCBI36
Build 341038,157,904 - 38,186,492NCBI
Celera1037,888,679 - 37,917,261 (-)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1037,773,361 - 37,854,952 (-)NCBIHuRef
CHM1_11038,065,938 - 38,147,487 (-)NCBICHM1_1
T2T-CHM13v2.01037,802,500 - 37,902,073 (-)NCBIT2T-CHM13v2.0
Zfp248
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396118,404,280 - 118,432,660 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6118,404,280 - 118,432,489 (-)EnsemblGRCm39 Ensembl
GRCm386118,427,319 - 118,455,699 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,427,319 - 118,455,528 (-)EnsemblGRCm38mm10GRCm38
MGSCv376118,377,337 - 118,405,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366118,392,938 - 118,421,125 (-)NCBIMGSCv36mm8
Celera6120,249,562 - 120,287,232 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.86NCBI
Zfp248
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84153,277,735 - 153,302,545 (-)NCBIGRCr8
mRatBN7.24151,605,433 - 151,630,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,606,495 - 151,629,850 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04150,483,571 - 150,507,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4150,482,667 - 150,506,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04216,406,853 - 216,430,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,737,651 - 154,759,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4140,475,340 - 140,498,986 (-)NCBICelera
Cytogenetic Map4q42NCBI
Znf248
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555461,008,416 - 1,033,023 (+)NCBIChiLan1.0ChiLan1.0
ZNF248
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2850,435,372 - 50,494,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11050,440,698 - 50,500,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01037,859,519 - 37,913,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11038,372,234 - 38,462,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1038,432,325 - 38,461,673 (-)Ensemblpanpan1.1panPan2
ZNF248
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.14150,300 - 177,799 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl4153,295 - 177,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha4193,091 - 220,545 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.04172,903 - 200,413 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl4175,666 - 199,834 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.14160,331 - 187,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.04267,994 - 295,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.04467,859 - 495,345 (-)NCBIUU_Cfam_GSD_1.0
Znf248
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721384,200,490 - 84,224,889 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366172,559,978 - 2,582,319 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366172,559,053 - 2,582,380 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF248
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1461,048,411 - 61,084,376 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11461,047,835 - 61,065,534 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,878,117 - 65,895,554 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Znf248
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624922131,714 - 149,599 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624922131,109 - 149,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007962416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_490288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_490289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_490290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007962417   ⟹   XP_007960608
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,084,815 - 38,116,298 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962418   ⟹   XP_007960609
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,084,355 - 38,116,298 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962419   ⟹   XP_007960610
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,085,139 - 38,113,942 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962420   ⟹   XP_007960611
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,084,407 - 38,113,942 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962421   ⟹   XP_007960612
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,085,139 - 38,113,942 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962424   ⟹   XP_007960615
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1938,084,815 - 38,116,298 (+)NCBI
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037988138   ⟹   XP_037844066
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
RefSeq Acc Id: XM_037988139   ⟹   XP_037844067
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,683 (-)NCBI
RefSeq Acc Id: XM_037988140   ⟹   XP_037844068
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,230 (-)NCBI
RefSeq Acc Id: XM_037988141   ⟹   XP_037844069
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
RefSeq Acc Id: XM_037988142   ⟹   XP_037844070
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,688,687 (-)NCBI
RefSeq Acc Id: XM_037988143   ⟹   XP_037844071
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,165 (-)NCBI
RefSeq Acc Id: XM_037988144   ⟹   XP_037844072
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606122,657,313 - 22,689,104 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007960609   ⟸   XM_007962418
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960611   ⟸   XM_007962420
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960608   ⟸   XM_007962417
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960615   ⟸   XM_007962424
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007960610   ⟸   XM_007962419
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960612   ⟸   XM_007962421
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844071   ⟸   XM_037988143
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037844072   ⟸   XM_037988144
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037844069   ⟸   XM_037988141
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037844070   ⟸   XM_037988142
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037844066   ⟸   XM_037988138
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844067   ⟸   XM_037988139
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844068   ⟸   XM_037988140
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene ZNF248 ENTREZGENE