GIMAP4 (GTPase, IMAP family member 4)

Gene: GIMAP4 (GTPase, IMAP family member 4) Chlorocebus sabaeus

Analyze

Symbol:

GIMAP4

Name:

GTPase, IMAP family member 4

RGD ID:

18528575

Description:

ENCODES a protein that exhibits GTP binding (inferred); nucleotide binding (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

GTPase IMAP family member 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	118,758,814 - 118,765,237 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	118,761,379 - 118,765,296 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	14,725,693 - 14,732,174 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

long QT syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA)

intracellular membrane-bounded organelle (IEA)

Molecular Function

GTP binding (IEA)

nucleotide binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

GIMAP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	118,758,814 - 118,765,237 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	118,761,379 - 118,765,296 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	14,725,693 - 14,732,174 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

GIMAP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	150,567,390 - 150,573,953 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	150,567,369 - 150,573,953 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	150,264,478 - 150,271,041 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	149,895,391 - 149,901,974 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	149,702,105 - 149,708,688	NCBI
Celera	7	144,821,534 - 144,828,117 (+)	NCBI		Celera
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	144,080,319 - 144,086,687 (+)	NCBI		HuRef
CHM1_1	7	150,272,847 - 150,279,430 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	151,745,701 - 151,752,264 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	149,602,273 - 149,608,853 (+)	NCBI

Gimap4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	48,661,453 - 48,668,996 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	48,661,483 - 48,668,994 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	48,684,578 - 48,692,062 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	48,684,549 - 48,692,060 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	48,634,577 - 48,642,061 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	48,614,164 - 48,621,648 (+)	NCBI		MGSCv36	mm8
Celera	6	49,195,428 - 49,202,910 (+)	NCBI		Celera
Cytogenetic Map	6	B2.3	NCBI
cM Map	6	23.66	NCBI

Gimap4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	78,967,297 - 78,974,211 (+)	NCBI		GRCr8
mRatBN7.2	4	77,636,401 - 77,643,315 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	77,636,401 - 77,643,306 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	82,843,871 - 82,850,781 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	78,619,378 - 78,626,288 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	77,059,659 - 77,066,569 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	78,320,230 - 78,327,144 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	78,320,190 - 78,327,144 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	143,008,388 - 143,015,302 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	76,777,679 - 76,784,519 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	77,055,948 - 77,060,640 (+)	NCBI
Celera	4	72,573,763 - 72,580,677 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

GIMAP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	187,009,270 - 187,015,878 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	39,019,539 - 39,026,142 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	142,176,170 - 142,182,797 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	154,329,572 - 154,336,257 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	154,329,572 - 154,336,257 (+)	Ensembl	panpan1.1		panPan2

GIMAP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	14,811,421 - 14,832,880 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	14,811,416 - 14,832,019 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	15,419,773 - 15,440,681 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	16,526,715 - 16,547,633 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	16,526,781 - 16,547,622 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	14,906,140 - 14,927,048 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	15,487,435 - 15,508,340 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	15,537,710 - 15,558,644 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101973529
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	6,747,059 - 6,747,499 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936527	6,155,923 - 6,156,367 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GIMAP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	6,429,887 - 6,452,966 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	6,429,886 - 6,452,963 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	6,613,849 - 6,620,847 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Gimap4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624800	5,982,938 - 5,990,329 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624800	5,982,786 - 5,990,329 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	20	31
Low			29
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007983438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000004927 ⟹ ENSCSAP00000003168

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	21	118,761,379 - 118,765,296 (+)	Ensembl

RefSeq Acc Id:

XM_007983438 ⟹ XP_007981629

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	118,758,814 - 118,765,237 (+)	NCBI
Vero_WHO_p1.0	NW_023666072	14,725,693 - 14,732,174 (+)	NCBI

Sequence:

show sequence

CTGGACAGCTCCTCCCCTCACTTCCTCTCTTTTCCTCTTTCTCAACATCCTGGCTTAGTATTGT
GTGCAAAATCAGAGAGGGGTGCAGGACCCTGATTTTCCAGGAGTTCAAGCGACAATGGCAGCCC
GATTCGGCAGTGTGAGCTTCAACCCCAGCACACTAGGGGCCAGTTATGGGCCTGGAAGGCAAGA
GCCCAGAGATTCCCAATTGAGAATTGTGTTAGTGGGTAAAACCGGAGCAGGAAAAAGTGCAACA
GGAAACAGCATCCTTGACCAGAAAGTGTTTCATTCTGGCATTGCAGCAAAATCCATTACCAAGA
ACTGTGAGAAACGCAGCAGCTCATGGAAGGAAACAGAACTTGTCGTGGTTGACACACCAGGCAT
TTTCGACACCGAGGTGCACGATGCTGACACATCCAAGGAGATTGCTCGCTGCATTCTCCTGACC
TCCCCAGGGCCTCACGCTCTGCTTCTGGTGGTCCCATTGGGCCGTTACACTAAGGAAGAGCACA
AGGCCACACAGAAGATCCTGAAAATGTTTGGAGAGAGGGCTAGAAGATTCATGATTCTCGTATT
CACCCGGAAAGACGACTTAGGTGGCACCAATTTGCATGACTACTTAGGGGAAGCTCCAAGAGAC
ATTCAAGAGTTGATGGACATTTTTGGTGACCGCTACTGTGCATTCAACAACAGGGCAACAGGCG
CTGAGCAGGAGGCCCAGAGGGCACAGTTGCTGGCCCTGATCCAACGCGTGGTGAAGGAGAACAA
GGGAGGCTGCTACACTAATAGGATGTACCAAAGGGCCGAGGAGGAGATCCAGAAGCAAACACAA
GCAATACAAGAACTCTATAGAGTGGAGCTGGAGAGAGAGAAAGCACGGATAAGAGAGGAGTATG
AAGAGAAAATCAGAAAGCTGGAAGATAAGCTGGAGCAGGAAAAGAGAAAGGCACAAATGGAGAA
AAAAATAGCAGAACAGGAGGCTCTCTGTGCTGTAAGGCAGCAAGGGGCAAGAATGGAAGTGGAG
AGTCAGGATAGGATACTTGAATTTATCATGAGAGCATTAGAGATTGCTTCCTCTATTTTCTTAC
AGCTGTTCGCGGAAGACTAAACTTAATGAAAATCTCTTTGTATTTTCTGCATATTCTCTAGCAA
CCTTGCCCCATACTTACTCATTTAGCATAGTCAGAGTGCTCTAGTCGCTGTCTCTCAGGTGCTC
ATAACTAAGGACCACCATTGGCCATTAGTAGATATTTGATTGACTTAACAAGAGAGGGACAAAT
TTTCAATTTGTGAAATTCCAAAGCAGAAAGTATTGGTGCTTACTACCTTGTGAATTCTTCCTTA
GTCAAGCAGAGAAAATGTATACAAGAGACCAAAGAAGATGGCTCCAAGCTATATCATGTTACCT
CTAATAAAATATTTTCTTCTAGATTCTTTCTATATTAGCAGATAATCTCCCTTTGTAGCTTCCA
CTCACTTACTCTTGCGTTCAGATCATCTTACCCATGTGGTTTGTTAGAAAGAAAGATTAATTAT
TTGTTTGCAGTAGGTAATCTTGGAGATGGAGATGATTGTAGAATTGTTTCTAGATGAGTGTCAA
TTTATTTAATTCCATTGTCATATAAGGAGTCAAATTGTTTCTTATCATTTGCTCACTAAAGAAC
AGAGATGTGTCTGGAAAATCGATCTCTACAAATTCAACTAAATAATGATCCCCAAATGCTGAAA
GAATGAAAGACAGCAATTCAACAGATAATACAGCAATGTTTAGTATATTCAGGTGTATCTGTAG
AAACTCTTTGACCAACCTCAATTTAACCAATTTGATGAATACCTGGTTCTCTCCTTTTCTTGAG
AAAGATAGTTGAACCTCACTTCCCTCACTCAACACTTTGAATACTAATTGTTTGGCAGGTTATC
CACACACTTCTACCCCCACTGCATTGAACTTTTTGCTTATTGTGTTTATAATAAAACTTTTCAA
TTATCTCATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007981629	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000003168
	ENSCSAP00000003168.1

RefSeq Acc Id:	XP_007981629 ⟸ XM_007983438
- UniProtKB:	A0A0D9R3H9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000003168 ⟸ ENSCSAT00000004927

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006878	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004927.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	G_AIG1	UniProtKB/TrEMBL
	GIMA/IAN/Toc	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	csab:103227219	UniProtKB/TrEMBL
NCBI Gene	GIMAP4	ENTREZGENE
PANTHER	GTPASE IMAP FAMILY MEMBER 4	UniProtKB/TrEMBL
	PTHR10903	UniProtKB/TrEMBL
Pfam	AIG1	UniProtKB/TrEMBL
PROSITE	G_AIG1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0D9R3H9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar