SAFB (scaffold attachment factor B)

Gene: SAFB (scaffold attachment factor B) Chlorocebus sabaeus

Analyze

Symbol:

SAFB

Name:

scaffold attachment factor B

RGD ID:

18528074

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN hormone metabolic process (ortholog); intracellular estrogen receptor signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN midbody (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

scaffold attachment factor B1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	5,281,171 - 5,326,049 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	5,281,232 - 5,328,511 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hormone metabolic process (ISO)

intracellular estrogen receptor signaling pathway (IEA,ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of growth (ISO)

regulation of mRNA processing (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

midbody (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (ISO)

protein binding (ISO)

RNA binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (IEA,ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SAFB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	5,281,171 - 5,326,049 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	5,281,232 - 5,328,511 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SAFB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	5,623,083 - 5,668,478 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	5,623,035 - 5,668,478 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	5,623,094 - 5,668,489 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	5,574,164 - 5,619,489 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	5,574,163 - 5,619,488	NCBI
Celera	19	5,560,521 - 5,605,843 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	5,384,164 - 5,429,603 (+)	NCBI		HuRef
CHM1_1	19	5,622,638 - 5,668,071 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	5,609,766 - 5,655,162 (+)	NCBI		T2T-CHM13v2.0

Safb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	56,891,982 - 56,913,294 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	56,891,825 - 56,913,294 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	56,584,982 - 56,606,294 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	56,584,825 - 56,606,294 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	56,724,405 - 56,745,717 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	56,269,818 - 56,291,413 (+)	NCBI		MGSCv36	mm8
Celera	17	60,929,194 - 60,950,493 (+)	NCBI		Celera
Cytogenetic Map	17	D	NCBI
cM Map	17	29.4	NCBI

Safb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	1,504,657 - 1,525,545 (+)	NCBI		GRCr8
mRatBN7.2	9	1,417,449 - 1,438,408 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	1,417,525 - 1,438,644 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	1,850,960 - 1,871,831 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	7,201,129 - 7,222,017 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	6,156,164 - 6,177,036 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,450,216 - 10,471,174 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	10,450,205 - 10,471,176 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	9,447,161 - 9,468,030 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	9	7,075,428 - 7,096,066 (-)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

Safb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	3,743,858 - 3,774,913 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	3,743,673 - 3,775,073 (-)	NCBI	ChiLan1.0	ChiLan1.0

SAFB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	10,019,474 - 10,064,975 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	9,245,664 - 9,291,164 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	4,640,267 - 4,685,643 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	5,575,592 - 5,620,513 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	5,575,592 - 5,620,513 (+)	Ensembl	panpan1.1		panPan2

SAFB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	54,346,273 - 54,381,078 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	54,346,353 - 54,381,363 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	54,072,813 - 54,107,740 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	55,001,804 - 55,036,977 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	55,001,804 - 55,037,252 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	54,064,174 - 54,099,109 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	54,544,742 - 54,579,637 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	54,741,968 - 54,777,221 (-)	NCBI		UU_Cfam_GSD_1.0

Safb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	214,581,094 - 214,610,314 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	3,225,752 - 3,253,678 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	3,225,315 - 3,253,689 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SAFB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	73,300,632 - 73,334,494 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	73,300,624 - 73,334,494 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	73,822,604 - 73,905,016 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Safb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	4,525,536 - 4,557,715 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	4,526,708 - 4,557,458 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	10	60
Low		10
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007994927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007994928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007994929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007994930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000008033 ⟹ ENSCSAP00000006191

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	6	5,281,232 - 5,328,511 (+)	Ensembl

RefSeq Acc Id:

XM_007994927 ⟹ XP_007993118

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	5,281,171 - 5,326,049 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI

Sequence:

show sequence

GTTGCAACCGGGATAGTCGAGCCTGCGCTTGGTGCGCCTGCGCAGAAGCGAGGCGCGCCGGGGC
GACTGGAGCGGTTCCCTCGCAGGCGGCGCCATTTTGTGCTGGGAGCCTGATAAAACCGGCCCGG
TTCTGTGGAAAGTGGGCGGCGGAGCCAGGGTCCCTGGAATGGCGGAGACTCTGTCAGGCCTAGG
AGATTCTGGAGCGGCGGGCGCGGCGGCTCTGAGCTCCGCCTCGTCAGAGACCGGAACGCGGCGC
CTCAGCGACCTGCGAGTGATCGATCTGCGGGCGGAGCTGAGGAAACGGAATGTGGACTCGAGCG
GCAACAAGAGCGTTTTGATGGAGCGGCTGAAGAAGGCAATTGAAGATGAAGGTGGTAATCCTGA
CGAAATTGAAATTACCTCCGACGGAAACAAGAAAACATCGAAGAGGTCCAGCAAAGGGCGCAAA
CCAGAAGAAGAGGGTGTGGAAGATAACGGGCTGGAGGAAAACTCTGGGGATGGACAGGAGGATG
TTGAGACCAGTCTGGAGAACTTGCAGGACATCGACATCATGGATATCAGTGTGTTGGATGAAGC
AGAAATTGATAATGGAAGCGTTGCAGATTGTGTCGAAGACGATGATGCTGATAACCTCCAGGAG
TCCCTGTCGGATAGTAGAGAGCTAGTCGAGGGGGAAATGAAAGAGCTTCCGGAGCAGCTTCAGG
AACATGCTATAGAGGACAAAGAAACTATAAACAATTTAGATACTTCATCATCTGACTTCACTAT
ATTACAGGAAATTGAAGAGCCATCCCTGGAGCCAGAAAATGAGAAAATACTCGACATTTTGGGG
GAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAAGTTCCGAGCTGGAGCAGCCATTTGCACAGG
ACACAAGTAGCGTGGGGCCAGACAGAAAGCTTGCGGAGGAAGAGGACCTATTTGACAGCGCCCA
TCCGGAAGAGGGTGATTTAGATTTGGCCAGCGAGTCAACAGCACACGCTCAGTCGAGCAAGGCA
GACAGCCTGTTAGCGGTAGTGAAAAGGGAGCCCGCGGAGCAGCCAGGCGATGGCGAGAGGACGG
ACTGTGAGCCTGTAGGGCTAGAGCCGGCAGTTGAGCAGAGTAGTGCGGCCTCCGAGCTCGCGGA
GGCCTCTAGCGAGGAGCTCGCGGAAGCACCCACGGAAGCCGCAAGCCCAGAAGCCAGAGATAGC
AAAGAAGACGGGAGGAAGTTTGATTTTGAAGCTTGTAATGAAGTCCCTCCGGCTCCTAAAGAGT
CCTCAACCAGTGAGGGCGCTGATCAGAAAATGAGTTCTCCCGAAGATGACTCGGATACAAAAAG
GCTTTCCAAAGAGGAAAAGGGTCGCAGCAGTTGTGGTAGAAATTTCTGGGTTAGTGGACTCTCT
TCTACAACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGGAAGGTGGTGGGCGCCA
AGGTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGTTACGGTTTTGTCACGATGTCCACAGC
AGAAGAGGCCACGAAATGCATTAACCACCTGCACAAGACGGAGCTCCACGGAAAGATGATCTCC
GTGGAGAAAGCCAAAAATGAACCTGTGGGAAAGAAAACCTCTGACAAAAGAGACAGTGACGGGA
AAAAGGAGAAGTCGAGCAACAGTGACAGATCTGCAAACCTTAAGAGGGACGATAAATGTGACAG
AAAAGATGATACTAAGAAGGGTGAAGACGGAAGTGGAGAAAAGAGTAAGGACCAAGATGATCAG
AAACCTGGCCCCTCAGAGCGCTCTCGAGCCACAAAGTCAGGAAGTCGAGGGACCGAGCGGACTG
TAGTAATGGATAAATCCAAAGGGGTGCCTGTGATTAGTGTAAAAACATCTGGGTCCAAAGAGAG
AGCTTCCAAAAGTCAGGATCGCAAATCAGCCAGCAGAGAGAAGCGGTCCGTTGTGTCCTTTGAT
AAGGTCAAGGAGCCTCGGAAGTCGAGAGACTCAGAGTCCCATAGCAGGGTACGTGAGCGCAGTG
AACGCGAACAACGGATGCAGGCGCAGTGGGAGCGCGAGGAGCGTGAGCGGCTGGAGATTGCCCG
AGAGAGGCTGGCCTTCCAGCGCCAGCGGCTGGAGCGTGAGCGCATGGAGCGAGAGCGGCTGGAG
CGCGAGCGCATGCACGTGGAGCACGAGCGCAGGCGTGAGCAGGAGCGCATCCACCGTGAGCGTG
AGGAACTGCGGCGCCAGCAGGAACTGCGCTACGAGCAGGAGCGGCGGCCTGCGGTGCGGCGGCC
CTACGACCTGGACCGGCGAGATGATGCCTATTGGCCAGAAGCCAAGCGGGCCGCCCTGGATGAG
CGCTACCATTCTGACTTTAACCGCCAGGACCGCTTCCACGACTTTGACCACAGGGACCGCGGTC
GCTACCCCGACCACTCGGTGGACAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAAGG
ACAGCATTACCCAGAACGCCATGGAGGACCAGAGCGCCACGGCCGGGACTCCCGTGATGGCTGG
GGGGGCTATGGCTCCGACAAGAGGATGAGTGAGGGCCGGGGGCTGCCTCCTCCCCCCAGGGGCA
GACGTGACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGGCATGGCAGGGCACGGCTGACGG
TGGCATGATGGACAGGGATCACAAGAGGTGGCAAGGTGGTGAGAGAAGCATGTCTGGTCACTCG
GGGCCTGGCCACATGATGAACCGAGGAGGGATGTCAGGGCGCGGCAGCTTTGCCCCAGGTGGGG
CCTCCCGGGGCCACCCCATCCCACACGGTGGCATGCAAGGCGGGTTTGGAGGCCAGAGCCGGGG
GAGCAGGCCCAGCGACGCCCGCTTCACTCGCCGCTACTGAGTACTTGGAATCCTGTGTCCTGTC
ACGTGGCAACAAGGCTATGTTCTGTTAGGAGTTATCTTAAACTGTGTAAAAATATTTTTTTTTT
AATCTGCTGCCATATTGTAGCTCAATACAATGTGAATTTTGTTTTTCGTTTTGGGGTTGTTTTT
TTTTTTTTTGTAATAAATGTGTTTCCGTTCACATACCCTTTA

hide sequence

RefSeq Acc Id:

XM_007994928 ⟹ XP_007993119

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	5,281,171 - 5,326,049 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI

Sequence:

show sequence

GTTGCAACCGGGATAGTCGAGCCTGCGCTTGGTGCGCCTGCGCAGAAGCGAGGCGCGCCGGGGC
GACTGGAGCGGTTCCCTCGCAGGCGGCGCCATTTTGTGCTGGGAGCCTGATAAAACCGGCCCGG
TTCTGTGGAAAGTGGGCGGCGGAGCCAGGGTCCCTGGAATGGCGGAGACTCTGTCAGGCCTAGG
AGATTCTGGAGCGGCGGGCGCGGCGGCTCTGAGCTCCGCCTCGTCAGAGACCGGAACGCGGCGC
CTCAGCGACCTGCGAGTGATCGATCTGCGGGCGGAGCTGAGGAAACGGAATGTGGACTCGAGCG
GCAACAAGAGCGTTTTGATGGAGCGGCTGAAGAAGGCAATTGAAGATGAAGGTGGTAATCCTGA
CGAAATTGAAATTACCTCCGACGGAAACAAGAAAACATCGAAGAGGTCCAGCAAAGGGCGCAAA
CCAGAAGAAGAGGGTGTGGAAGATAACGGGCTGGAGGAAAACTCTGGGGATGGACAGGAGGATG
TTGAGACCAGTCTGGAGAACTTGCAGGACATCGACATCATGGATATCAGTGTGTTGGATGAAGC
AGAAATTGATAATGGAAGCGTTGCAGATTGTGTCGAAGACGATGATGCTGATAACCTCCAGGAG
TCCCTGTCGGATAGTAGAGAGCTAGTCGAGGGGGAAATGAAAGAGCTTCCGGAGCAGCTTCAGG
AACATGCTATAGAGGACAAAGAAACTATAAACAATTTAGATACTTCATCATCTGACTTCACTAT
ATTACAGGAAATTGAAGAGCCATCCCTGGAGCCAGAAAATGAGAAAATACTCGACATTTTGGGG
GAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAAGTTCCGAGCTGGAGCAGCCATTTGCACAGG
ACACAAGTAGCGTGGGGCCAGACAGAAAGCTTGCGGAGGAAGAGGACCTATTTGACAGCGCCCA
TCCGGAAGAGGGTGATTTAGATTTGGCCAGCGAGTCAACAGCACACGCTCAGTCGAGCAAGGCA
GACAGCCTGTTAGCGGTAGTGAAAAGGGAGCCCGCGGAGCAGCCAGGCGATGGCGAGAGGACGG
ACTGTGAGCCTGTAGGGCTAGAGCCGGCAGTTGAGCAGAGTAGTGCGGCCTCCGAGCTCGCGGA
GGCCTCTAGCGAGGAGCTCGCGGAAGCACCCACGGAAGCCGCAAGCCCAGAAGCCAGAGATAGC
AAAGAAGACGGGAGGAAGTTTGATTTTGAAGCTTGTAATGAAGTCCCTCCGGCTCCTAAAGAGT
CCTCAACCAGTGAGGGCGCTGATCAGAAAATGAGTTCTCCCGAAGATGACTCGGATACAAAAAG
GCTTTCCAAAGAGGAAAAGGGTCGCAGCAGTTGTGGTAGAAATTTCTGGGTTAGTGGACTCTCT
TCTACAACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGGAAGGTGGTGGGCGCCA
AGGTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGTTACGGTTTTGTCACGATGTCCACAGC
AGAAGAGGCCACGAAATGCATTAACCACCTGCACAAGACGGAGCTCCACGGAAAGATGATCTCC
GTGGAGAAAGCCAAAAATGAACCTGTGGGAAAGAAAACCTCTGACAAAAGAGACAGTGACGGGA
AAAAGGAGAAGTCGAGCAACAGTGACAGATCTGCAAACCTTAAGAGGGACGATAAATGTGACAG
AAAAGATGATACTAAGAAGGGTGAAGACGGAAGTGGAGAAAAGAGTAAGGACCAAGATGATCAG
AAACCTGGCCCCTCAGAGCGCTCTCGAGCCACAAAGTCAGGAAGTCGAGGGACCGAGCGGACTG
TAGTAATGGATAAATCCAAAGGGGTGCCTGTGATTAGTGTAAAAACATCTGGGTCCAAAGAGAG
AGCTTCCAAAAGTCAGGATCGCAAATCAGCCAGCAGAGAGAAGCGGTCCGTTGTGTCCTTTGAT
AAGGTCAAGGAGCCTCGGAAGTCGAGAGACTCAGAGTCCCATAGGGTACGTGAGCGCAGTGAAC
GCGAACAACGGATGCAGGCGCAGTGGGAGCGCGAGGAGCGTGAGCGGCTGGAGATTGCCCGAGA
GAGGCTGGCCTTCCAGCGCCAGCGGCTGGAGCGTGAGCGCATGGAGCGAGAGCGGCTGGAGCGC
GAGCGCATGCACGTGGAGCACGAGCGCAGGCGTGAGCAGGAGCGCATCCACCGTGAGCGTGAGG
AACTGCGGCGCCAGCAGGAACTGCGCTACGAGCAGGAGCGGCGGCCTGCGGTGCGGCGGCCCTA
CGACCTGGACCGGCGAGATGATGCCTATTGGCCAGAAGCCAAGCGGGCCGCCCTGGATGAGCGC
TACCATTCTGACTTTAACCGCCAGGACCGCTTCCACGACTTTGACCACAGGGACCGCGGTCGCT
ACCCCGACCACTCGGTGGACAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAAGGACA
GCATTACCCAGAACGCCATGGAGGACCAGAGCGCCACGGCCGGGACTCCCGTGATGGCTGGGGG
GGCTATGGCTCCGACAAGAGGATGAGTGAGGGCCGGGGGCTGCCTCCTCCCCCCAGGGGCAGAC
GTGACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGGCATGGCAGGGCACGGCTGACGGTGG
CATGATGGACAGGGATCACAAGAGGTGGCAAGGTGGTGAGAGAAGCATGTCTGGTCACTCGGGG
CCTGGCCACATGATGAACCGAGGAGGGATGTCAGGGCGCGGCAGCTTTGCCCCAGGTGGGGCCT
CCCGGGGCCACCCCATCCCACACGGTGGCATGCAAGGCGGGTTTGGAGGCCAGAGCCGGGGGAG
CAGGCCCAGCGACGCCCGCTTCACTCGCCGCTACTGAGTACTTGGAATCCTGTGTCCTGTCACG
TGGCAACAAGGCTATGTTCTGTTAGGAGTTATCTTAAACTGTGTAAAAATATTTTTTTTTTAAT
CTGCTGCCATATTGTAGCTCAATACAATGTGAATTTTGTTTTTCGTTTTGGGGTTGTTTTTTTT
TTTTTTGTAATAAATGTGTTTCCGTTCACATACCCTTTA

hide sequence

RefSeq Acc Id:

XM_007994929 ⟹ XP_007993120

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	5,281,171 - 5,326,049 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI

Sequence:

show sequence

GTTGCAACCGGGATAGTCGAGCCTGCGCTTGGTGCGCCTGCGCAGAAGCGAGGCGCGCCGGGGC
GACTGGAGCGGTTCCCTCGCAGGCGGCGCCATTTTGTGCTGGGAGCCTGATAAAACCGGCCCGG
TTCTGTGGAAAGTGGGCGGCGGAGCCAGGGTCCCTGGAATGGCGGAGACTCTGTCAGGCCTAGG
AGATTCTGGAGCGGCGGGCGCGGCGGCTCTGAGCTCCGCCTCGTCAGAGACCGGAACGCGGCGC
CTCAGCGACCTGCGAGTGATCGATCTGCGGGCGGAGCTGAGGAAACGGAATGTGGACTCGAGCG
GCAACAAGAGCGTTTTGATGGAGCGGCTGAAGAAGGCAATTGAAGATGAAGGTGGTAATCCTGA
CGAAATTGAAATTACCTCCGACGGAAACAAGAAAACATCGAAGAGGTCCAGCAAAGGGCGCAAA
CCAGAAGAAGAGGGTGTGGAAGATAACGGGCTGGAGGAAAACTCTGGGGATGGACAGGAGGATG
TTGAGACCAGTCTGGAGAACTTGCAGGACATCGACATCATGGATATCAGTGTGTTGGATGAAGC
AGAAATTGATAATGGAAGCGTTGCAGATTGTGTCGAAGACGATGATGCTGATAACCTCCAGGAG
TCCCTGTCGGATAGTAGAGAGCTAGTCGAGGGGGAAATGAAAGAGCTTCCGGAGCAGCTTCAGG
AACATGCTATAGAGGACAAAGAAACTATAAACAATTTAGATACTTCATCATCTGACTTCACTAT
ATTACAGGAAATTGAAGAGCCATCCCTGGAGCCAGAAAATGAGAAAATACTCGACATTTTGGGG
GAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAAGTTCCGAGCTGGAGCAGCCATTTGCACAGG
ACACAAGTAGCGTGGGGCCAGACAGAAAGCTTGCGGAGGAAGAGGACCTATTTGACAGCGCCCA
TCCGGAAGAGGGTGATTTAGATTTGGCCAGCGAGTCAACAGCACACGCTCAGTCGAGCAAGGCA
GACAGCCTGTTAGCGGTAGTGAAAAGGGAGCCCGCGGAGCAGCCAGGCGATGGCGAGAGGACGG
ACTGTGAGCCTGTAGGGCTAGAGCCGGCAGTTGAGCAGAGTAGTGCGGCCTCCGAGCTCGCGGA
GGCCTCTAGCGAGGAGCTCGCGGAAGCACCCACGGAAGCCGCAAGCCCAGAAGCCAGAGATAGC
AAAGAAGACGGGAGGAAGTTTGATTTTGAAGCTTGTAATGAAGTCCCTCCGGCTCCTAAAGAGT
CCTCAACCAGTGAGGGCGCTGATCAGAAAATGAGTTCTCCCGAAGATGACTCGGATACAAAAAG
GCTTTCCAAAGAGGAAAAGGGTCGCAGCAGTTGTGGTAGAAATTTCTGGGTTAGTGGACTCTCT
TCTACAACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGGAAGGTGGTGGGCGCCA
AGGTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGTTACGGTTTTGTCACGATGTCCACAGC
AGAAGAGGCCACGAAATGCATTAACCACCTGCACAAGACGGAGCTCCACGGAAAGATGATCTCC
GTGGAGAAAGCCAAAAATGAACCTGTGGGAAAGAAAACCTCTGACAAAAGAGACAGTGACGGGA
AAAAGGAGAAGTCGAGCAACAGTGACAGATCTGCAAACCTTAAGAGGGACGATAAATGTGACAG
AAAAGATGATACTAAGAAGGGTGAAGACGGAAGTGGAGAAAAGAGTAAGGACCAAGATGATCAG
AAACCTGGCCCCTCAGAGCGCTCTCGAGCCACAAAGTCAGGAAGTCGAGGGACCGAGCGGACTG
TAGTAATGGATAAATCCAAAGGGGTGCCTGTGATTAGTGTAAAAACATCTGGGTCCAAAGAGAG
AGCTTCCAAAAGTCAGGATCGCAAATCAGCCAGCAGAGAGAAGCGGTCCGTTGTGTCCTTTGAT
AAGGTCAAGGAGCCTCGGAAGTCGAGAGACTCAGAGTCCCATAGCAGGGTACGTGAGCGCAGTG
AACGCGAACAACGGATGCAGGCGCAGTGGGAGCGCGAGGAGCGTGAGCGGCTGGAGATTGCCCG
AGAGAGGCTGGCCTTCCAGCGCCAGCGGCTGGAGCGTGAGCGCATGGAGCGAGAGCGGCTGGAG
CGCGAGCGCATGCACGTGGAGCACGAGCGCAGGCGTGAGCAGGAGCGCATCCACCGTGAGCGTG
AGGAACTGCGGCGCCAGCAGGAACTGCGCTACGAGCAGGAGCGGCGGCCTGCGGTGCGGCGGCC
CTACGACCTGGACCGGCGAGATGATGCCTATTGGCCAGAAGCCAAGCGGGCCGCCCTGGATGAG
CGCTACCATTCTGACTTTAACCGCCAGGACCGCTTCCACGACTTTGACCACAGGGACCGCGGTC
GCTACCCCGACCACTCGGTGGACAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAAGG
ACAGCATTACCCAGAACGCCATGGAGGACCAGAGCGCCACGGCCGGGACTCCCGTGATGGCTGG
GGGGGCTATGGCTCCGACAAGAGGATGAGTGAGGGCCGGGGGCTGCCTCCTCCCCCCAGACGTG
ACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGGCATGGCAGGGCACGGCTGACGGTGGCAT
GATGGACAGGGATCACAAGAGGTGGCAAGGTGGTGAGAGAAGCATGTCTGGTCACTCGGGGCCT
GGCCACATGATGAACCGAGGAGGGATGTCAGGGCGCGGCAGCTTTGCCCCAGGTGGGGCCTCCC
GGGGCCACCCCATCCCACACGGTGGCATGCAAGGCGGGTTTGGAGGCCAGAGCCGGGGGAGCAG
GCCCAGCGACGCCCGCTTCACTCGCCGCTACTGAGTACTTGGAATCCTGTGTCCTGTCACGTGG
CAACAAGGCTATGTTCTGTTAGGAGTTATCTTAAACTGTGTAAAAATATTTTTTTTTTAATCTG
CTGCCATATTGTAGCTCAATACAATGTGAATTTTGTTTTTCGTTTTGGGGTTGTTTTTTTTTTT
TTTGTAATAAATGTGTTTCCGTTCACATACCCTTTA

hide sequence

RefSeq Acc Id:

XM_007994930 ⟹ XP_007993121

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	5,281,219 - 5,326,049 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,824,606 (-)	NCBI

Sequence:

show sequence

CGAGGCGCGCCGGGGCGACTGGAGCGGTTCCCTCGCAGGCGGCGCCATTTTGTGCTGGGAGCCT
GATAAAACCGGCCCGGTTCTGTGGAAAGTGGGCGGCGGAGCCAGGGTCCCTGGAATGGCGGAGA
CTCTGTCAGGCCTAGGAGATTCTGGAGCGGCGGGCGCGGCGGCTCTGAGCTCCGCCTCGTCAGA
GACCGGAACGCGGCGCCTCAGCGACCTGCGAGTGATCGATCTGCGGGCGGAGCTGAGGAAACGG
AATGTGGACTCGAGCGGCAACAAGAGCGTTTTGATGGAGCGGCTGAAGAAGGCAATTGAAGATG
AAGGTGGTAATCCTGACGAAATTGAAATTACCTCCGACGGAAACAAGAAAACATCGAAGAGGTC
CAGCAAAGGGCGCAAACCAGAAGAAGAGGGTGTGGAAGATAACGGGCTGGAGGAAAACTCTGGG
GATGGACAGGAGGATGTTGAGACCAGTCTGGAGAACTTGCAGGACATCGACATCATGGATATCA
GTGTGTTGGATGAAGCAGAAATTGATAATGGAAGCGTTGCAGATTGTGTCGAAGACGATGATGC
TGATAACCTCCAGGAGTCCCTGTCGGATAGTAGAGAGCTAGTCGAGGGGGAAATGAAAGAGCTT
CCGGAGCAGCTTCAGGAACATGCTATAGAGGACAAAGAAACTATAAACAATTTAGATACTTCAT
CATCTGACTTCACTATATTACAGGAAATTGAAGAGCCATCCCTGGAGCCAGAAAATGAGAAAAT
ACTCGACATTTTGGGGGAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAAGTTCCGAGCTGGAG
CAGCCATTTGCACAGGACACAAGTAGCGTGGGGCCAGACAGAAAGCTTGCGGAGGAAGAGGACC
TATTTGACAGCGCCCATCCGGAAGAGGGTGATTTAGATTTGGCCAGCGAGTCAACAGCACACGC
TCAGTCGAGCAAGGCAGACAGCCTGTTAGCGGTAGTGAAAAGGGAGCCCGCGGAGCAGCCAGGC
GATGGCGAGAGGACGGACTGTGAGCCTGTAGGGCTAGAGCCGGCAGTTGAGCAGAGTAGTGCGG
CCTCCGAGCTCGCGGAGGCCTCTAGCGAGGAGCTCGCGGAAGCACCCACGGAAGCCGCAAGCCC
AGAAGCCAGAGATAGCAAAGAAGACGGGAGGAAGTTTGATTTTGAAGCTTGTAATGAAGTCCCT
CCGGCTCCTAAAGAGTCCTCAACCAGTGAGGGCGCTGATCAGAAAATGAGTTCTCCCGAAGATG
ACTCGGATACAAAAAGGCTTTCCAAAGAGGAAAAGGGTCGCAGCAGTTGTGGTAGAAATTTCTG
GGTTAGTGGACTCTCTTCTACAACCAGAGCTACAGATTTGAAGAATCTTTTCAGCAAATATGGG
AAGGTGGTGGGCGCCAAGGTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCTGTTACGGTTTTG
TCACGATGTCCACAGCAGAAGAGGCCACGAAATGCATTAACCACCTGCACAAGACGGAGCTCCA
CGGAAAGATGATCTCCGTGGAGAAAGCCAAAAATGAACCTGTGGGAAAGAAAACCTCTGACAAA
AGAGACAGTGACGGGAAAAAGGAGAAGTCGAGCAACAGTGACAGATCTGCAAACCTTAAGAGGG
ACGATAAATGTGACAGAAAAGATGATACTAAGAAGGGTGAAGACGGAAGTGGAGAAAAGAGTAA
GGACCAAGATGATCAGAAACCTGGCCCCTCAGAGCGCTCTCGAGCCACAAAGTCAGGAAGTCGA
GGGACCGAGCGGACTGTAGTAATGGATAAATCCAAAGGGGTGCCTGTGATTAGTGTAAAAACAT
CTGGGTCCAAAGAGAGAGCTTCCAAAAGTCAGGATCGCAAATCAGCCAGCAGAGAGAAGCGGTC
CGTTGTGTCCTTTGATAAGGTCAAGGAGCCTCGGAAGTCGAGAGACTCAGAGTCCCATAGGGTA
CGTGAGCGCAGTGAACGCGAACAACGGATGCAGGCGCAGTGGGAGCGCGAGGAGCGTGAGCGGC
TGGAGATTGCCCGAGAGAGGCTGGCCTTCCAGCGCCAGCGGCTGGAGCGTGAGCGCATGGAGCG
AGAGCGGCTGGAGCGCGAGCGCATGCACGTGGAGCACGAGCGCAGGCGTGAGCAGGAGCGCATC
CACCGTGAGCGTGAGGAACTGCGGCGCCAGCAGGAACTGCGCTACGAGCAGGAGCGGCGGCCTG
CGGTGCGGCGGCCCTACGACCTGGACCGGCGAGATGATGCCTATTGGCCAGAAGCCAAGCGGGC
CGCCCTGGATGAGCGCTACCATTCTGACTTTAACCGCCAGGACCGCTTCCACGACTTTGACCAC
AGGGACCGCGGTCGCTACCCCGACCACTCGGTGGACAGGAGAGAAGGTTCAAGGTCAATGATGG
GAGAACGAGAAGGACAGCATTACCCAGAACGCCATGGAGGACCAGAGCGCCACGGCCGGGACTC
CCGTGATGGCTGGGGGGGCTATGGCTCCGACAAGAGGATGAGTGAGGGCCGGGGGCTGCCTCCT
CCCCCCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGGCATGGCAGGGCACGG
CTGACGGTGGCATGATGGACAGGGATCACAAGAGGTGGCAAGGTGGTGAGAGAAGCATGTCTGG
TCACTCGGGGCCTGGCCACATGATGAACCGAGGAGGGATGTCAGGGCGCGGCAGCTTTGCCCCA
GGTGGGGCCTCCCGGGGCCACCCCATCCCACACGGTGGCATGCAAGGCGGGTTTGGAGGCCAGA
GCCGGGGGAGCAGGCCCAGCGACGCCCGCTTCACTCGCCGCTACTGAGTACTTGGAATCCTGTG
TCCTGTCACGTGGCAACAAGGCTATGTTCTGTTAGGAGTTATCTTAAACTGTGTAAAAATATTT
TTTTTTTAATCTGCTGCCATATTGTAGCTCAATACAATGTGAATTTTGTTTTTCGTTTTGGGGT
TGTTTTTTTTTTTTTTGTAATAAATGTGTTTCCGTTCACATACCCTTTA

hide sequence

RefSeq Acc Id:

XM_037994581 ⟹ XP_037850509

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666081	2,779,415 - 2,821,229 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007993118	(Get FASTA)	NCBI Sequence Viewer
	XP_007993119	(Get FASTA)	NCBI Sequence Viewer
	XP_007993120	(Get FASTA)	NCBI Sequence Viewer
	XP_007993121	(Get FASTA)	NCBI Sequence Viewer
	XP_037850509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000006191
	ENSCSAP00000006191.1

RefSeq Acc Id:	XP_007993118 ⟸ XM_007994927
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007993120 ⟸ XM_007994929
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_007993119 ⟸ XM_007994928
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RC52 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007993121 ⟸ XM_007994930
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSCSAP00000006191 ⟸ ENSCSAT00000008033

RefSeq Acc Id:	XP_037850509 ⟸ XM_037994581
- Peptide Label:	isoform X5

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000009949	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000008033.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	SAFB1	UniProtKB/TrEMBL
	SAP_dom	UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/TrEMBL
NCBI Gene	SAFB	ENTREZGENE
PANTHER	PTHR15683:SF6	UniProtKB/TrEMBL
	SCAFFOLD ATTACHMENT FACTOR B-RELATED	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
	SSF68906	UniProtKB/TrEMBL
UniProt	A0A0D9RC52	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar