ARMC5 (armadillo repeat containing 5) - Rat Genome Database

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Gene: ARMC5 (armadillo repeat containing 5) Chlorocebus sabaeus
Analyze
Symbol: ARMC5
Name: armadillo repeat containing 5
RGD ID: 18528000
Description: INVOLVED IN adrenal cortex development (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); defense response to virus (ortholog); ASSOCIATED WITH ACTH-independent macronodular adrenal hyperplasia 1 (ortholog); ACTH-independent macronodular adrenal hyperplasia 2 (ortholog); branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: armadillo repeat-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,159,796 - 28,167,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl528,160,617 - 28,167,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,272,573 - 1,281,211 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)
focal adhesion  (ISO)
membrane  (ISO)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARMC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,159,796 - 28,167,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl528,160,617 - 28,167,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,272,573 - 1,281,211 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARMC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,458,304 - 31,467,167 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,458,080 - 31,467,166 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,469,625 - 31,478,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,377,818 - 31,385,989 (+)NCBINCBI36Build 36hg18NCBI36
Build 341631,377,817 - 31,385,988NCBI
Celera1628,829,903 - 28,838,074 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,030,520 - 29,038,691 (+)NCBIHuRef
CHM1_11632,788,949 - 32,797,127 (+)NCBICHM1_1
T2T-CHM13v2.01631,845,692 - 31,854,555 (+)NCBIT2T-CHM13v2.0
Armc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,836,460 - 127,844,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,836,514 - 127,844,272 (+)EnsemblGRCm39 Ensembl
GRCm387128,237,357 - 128,245,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,237,342 - 128,245,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,380,871 - 135,388,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367128,028,505 - 128,036,248 (+)NCBIMGSCv36mm8
Celera7128,072,977 - 128,080,584 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map770.06NCBI
Armc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,250,580 - 192,257,347 (+)NCBIGRCr8
mRatBN7.21182,820,141 - 182,826,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,820,141 - 182,826,907 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,170,626 - 191,177,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,356,717 - 198,363,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01191,027,194 - 191,033,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,655,069 - 199,662,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,655,660 - 199,662,427 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,701,016 - 206,708,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,496,189 - 187,502,956 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,646,069 - 187,652,836 (+)NCBI
Celera1180,466,117 - 180,472,884 (+)NCBICelera
Cytogenetic Map1q37NCBI
Armc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,295,868 - 8,304,520 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,295,868 - 8,302,638 (+)NCBIChiLan1.0ChiLan1.0
ARMC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,657,013 - 34,676,566 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11639,467,340 - 39,477,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,498,343 - 23,507,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,828,015 - 31,837,845 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,828,037 - 31,840,479 (+)Ensemblpanpan1.1panPan2
ARMC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,782,732 - 16,789,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,781,860 - 16,788,878 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,375,841 - 18,383,039 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,907,572 - 16,914,772 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,907,580 - 16,913,596 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,711,148 - 16,718,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,630,761 - 16,637,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,942,497 - 16,949,700 (-)NCBIUU_Cfam_GSD_1.0
Armc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,674,012 - 125,681,772 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365438,354,760 - 8,361,269 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365438,354,795 - 8,366,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,100,618 - 17,109,054 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,100,612 - 17,108,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Armc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478214,462,114 - 14,468,404 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478214,461,488 - 14,468,407 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 32 28
Low 4 20 32
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000003656   ⟹   ENSCSAP00000001929
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl528,160,617 - 28,167,672 (+)Ensembl
RefSeq Acc Id: XM_007990774   ⟹   XP_007988965
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1528,160,199 - 28,167,575 (+)NCBI
Vero_WHO_p1.0NW_0236660681,272,573 - 1,281,211 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007990783   ⟹   XP_007988974
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1528,159,796 - 28,167,575 (+)NCBI
Vero_WHO_p1.0NW_0236660681,272,573 - 1,281,211 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988965 (Get FASTA)   NCBI Sequence Viewer  
  XP_007988974 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001929
  ENSCSAP00000001929.1
RefSeq Acc Id: XP_007988974   ⟸   XM_007990783
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QZZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007988965   ⟸   XM_007990774
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QZZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001929   ⟸   ENSCSAT00000003656


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005617 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003656.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene ARMC5 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED UniProtKB/TrEMBL
PROSITE ARM_REPEAT UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A0D9QZZ0 ENTREZGENE, UniProtKB/TrEMBL