ZNF32 (zinc finger protein 32) - Rat Genome Database

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Gene: ZNF32 (zinc finger protein 32) Chlorocebus sabaeus
Analyze
Symbol: ZNF32
Name: zinc finger protein 32
RGD ID: 18519749
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1939,297,149 - 39,302,680 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl939,297,079 - 39,302,669 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605647,159,487 - 47,164,939 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF32
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1939,297,149 - 39,302,680 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl939,297,079 - 39,302,669 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605647,159,487 - 47,164,939 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,643,862 - 43,648,881 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,643,860 - 43,648,881 (-)EnsemblGRCh38hg38GRCh38
GRCh371044,139,310 - 44,144,329 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361043,459,313 - 43,464,332 (-)NCBINCBI36Build 36hg18NCBI36
Build 341043,459,313 - 43,464,332NCBI
Celera1040,142,942 - 40,147,961 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1040,666,312 - 40,671,331 (-)NCBIHuRef
CHM1_11044,178,919 - 44,183,938 (-)NCBICHM1_1
T2T-CHM13v2.01044,524,781 - 44,529,800 (-)NCBIT2T-CHM13v2.0
Zfp637
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396117,818,165 - 117,822,917 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6117,818,141 - 117,822,917 (+)EnsemblGRCm39 Ensembl
GRCm386117,840,588 - 117,845,957 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6117,841,180 - 117,845,956 (+)EnsemblGRCm38mm10GRCm38
MGSCv376117,791,260 - 117,795,974 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366117,806,861 - 117,811,575 (+)NCBIMGSCv36mm8
Celera6119,661,395 - 119,666,109 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.59NCBI
Zfp637
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84152,656,937 - 152,682,499 (+)NCBIGRCr8
mRatBN7.24150,984,940 - 151,010,079 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4150,984,541 - 151,011,874 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4157,267,793 - 157,272,418 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,051,712 - 153,056,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04151,674,723 - 151,679,348 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04149,857,127 - 149,882,828 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4149,877,889 - 149,882,824 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04215,786,335 - 215,812,038 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,128,969 - 154,133,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4139,881,935 - 139,886,586 (+)NCBICelera
Cytogenetic Map4q42NCBI
Znf32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555461,475,968 - 1,481,422 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555461,475,968 - 1,481,436 (-)NCBIChiLan1.0ChiLan1.0
ZNF32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2856,366,606 - 56,372,240 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11056,371,934 - 56,377,804 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01040,626,745 - 40,632,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11043,807,785 - 43,812,817 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1043,807,785 - 43,812,716 (-)Ensemblpanpan1.1panPan2
ZNF32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1283,484,504 - 3,489,768 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl283,484,551 - 3,489,577 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha283,718,093 - 3,723,368 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0283,663,556 - 3,668,832 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl283,663,486 - 3,668,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1283,461,043 - 3,466,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,503,089 - 3,508,365 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,638,043 - 3,643,319 (+)NCBIUU_Cfam_GSD_1.0
Znf32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721383,278,033 - 83,282,243 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366173,500,480 - 3,505,952 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366173,501,738 - 3,505,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1492,151,255 - 92,156,075 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11492,151,231 - 92,156,077 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214100,716,469 - 100,717,406 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf32
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624922704,365 - 709,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624922700,927 - 709,812 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 44
Low 20 16
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000009009   ⟹   ENSCSAP00000007140
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl939,297,079 - 39,302,669 (-)Ensembl
RefSeq Acc Id: XM_007962476   ⟹   XP_007960667
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1939,297,149 - 39,302,680 (-)NCBI
Vero_WHO_p1.0NW_02366605647,159,487 - 47,164,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962477   ⟹   XP_007960668
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1939,297,149 - 39,302,071 (-)NCBI
Vero_WHO_p1.0NW_02366605647,160,022 - 47,164,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962479   ⟹   XP_007960670
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1939,297,149 - 39,300,438 (-)NCBI
Vero_WHO_p1.0NW_02366605647,160,022 - 47,164,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037986538   ⟹   XP_037842466
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605647,160,289 - 47,164,939 (+)NCBI
RefSeq Acc Id: XM_037986539   ⟹   XP_037842467
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605647,159,487 - 47,164,939 (+)NCBI
RefSeq Acc Id: XP_007960667   ⟸   XM_007962476
- Peptide Label: isoform X1
- UniProtKB: A0A0D9REV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007960668   ⟸   XM_007962477
- Peptide Label: isoform X1
- UniProtKB: A0A0D9REV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007960670   ⟸   XM_007962479
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000007140   ⟸   ENSCSAT00000009009
RefSeq Acc Id: XP_037842467   ⟸   XM_037986539
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037842466   ⟸   XM_037986538
- Peptide Label: isoform X1
- UniProtKB: A0A0D9REV1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010921 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009009.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103215772 UniProtKB/TrEMBL
NCBI Gene ZNF32 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9REV1 ENTREZGENE, UniProtKB/TrEMBL