SYT6 (synaptotagmin 6) - Rat Genome Database

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Gene: SYT6 (synaptotagmin 6) Chlorocebus sabaeus
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Symbol: SYT6
Name: synaptotagmin 6
RGD ID: 18517972
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN acrosome reaction (ortholog); postsynaptic dense core vesicle exocytosis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); hereditary spastic paraplegia 47 (ortholog); invasive ductal carcinoma (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptotagmin-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,497,218 - 19,561,621 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2019,512,540 - 19,563,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603822,260,659 - 22,330,080 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SYT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,497,218 - 19,561,621 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2019,512,540 - 19,563,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603822,260,659 - 22,330,080 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SYT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,089,292 - 114,153,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,089,291 - 114,153,880 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,631,914 - 114,696,491 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,433,437 - 114,497,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,346,428 - 114,408,514NCBI
Celera1112,861,141 - 112,925,712 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1112,489,973 - 112,554,564 (-)NCBIHuRef
CHM1_11114,746,727 - 114,811,584 (-)NCBICHM1_1
T2T-CHM13v2.01114,100,938 - 114,165,509 (-)NCBIT2T-CHM13v2.0
Syt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,482,561 - 103,552,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,482,547 - 103,552,885 (+)EnsemblGRCm39 Ensembl
GRCm383103,575,245 - 103,645,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,575,231 - 103,645,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,379,204 - 103,439,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,704,342 - 103,764,239 (+)NCBIMGSCv36mm8
Celera3105,781,488 - 105,842,192 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.45NCBI
Syt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82193,781,051 - 193,840,741 (+)NCBIGRCr8
mRatBN7.22191,093,009 - 191,152,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,093,007 - 191,149,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2198,690,257 - 198,749,449 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,562,984 - 196,622,178 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02191,379,964 - 191,439,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,064,181 - 206,119,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,064,179 - 206,127,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,492,367 - 225,547,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42198,807,340 - 198,862,227 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12198,770,093 - 198,824,981 (+)NCBI
Celera2183,565,789 - 183,620,107 (+)NCBICelera
Cytogenetic Map2q34NCBI
Syt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543517,347,011 - 17,405,526 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543517,349,971 - 17,405,526 (-)NCBIChiLan1.0ChiLan1.0
SYT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21106,748,881 - 106,818,586 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11106,342,558 - 106,412,360 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0188,397,809 - 88,467,493 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11123,453,698 - 123,514,804 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1123,452,889 - 123,514,795 (+)Ensemblpanpan1.1panPan2
SYT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,859,564 - 51,923,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,864,774 - 51,924,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1751,509,928 - 51,574,570 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01752,737,130 - 52,791,129 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1752,740,102 - 52,799,079 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11751,744,089 - 51,808,674 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01751,815,566 - 51,877,205 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,385,301 - 52,449,966 (-)NCBIUU_Cfam_GSD_1.0
Syt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505814,979,103 - 15,042,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366902,435,541 - 2,497,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366902,435,573 - 2,497,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4106,425,632 - 106,485,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14106,420,614 - 106,485,468 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,560,038 - 116,622,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Syt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247729,753,416 - 9,810,757 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247729,753,485 - 9,810,815 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


Ensembl Acc Id: ENSCSAT00000016883   ⟹   ENSCSAP00000016378
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2019,512,540 - 19,563,038 (+)Ensembl
RefSeq Acc Id: XM_007977487   ⟹   XP_007975678
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12019,497,218 - 19,561,621 (+)NCBI
Vero_WHO_p1.0NW_02366603822,260,664 - 22,330,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977488   ⟹   XP_007975679
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12019,497,218 - 19,561,621 (+)NCBI
Vero_WHO_p1.0NW_02366603822,260,756 - 22,330,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977489   ⟹   XP_007975680
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12019,497,658 - 19,561,621 (+)NCBI
Vero_WHO_p1.0NW_02366603822,260,659 - 22,330,080 (+)NCBI
Sequence:
RefSeq Acc Id: XR_494011
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12019,497,218 - 19,561,621 (+)NCBI
Vero_WHO_p1.0NW_02366603822,260,756 - 22,330,080 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007975678 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975679 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016378
  ENSCSAP00000016378.1
RefSeq Acc Id: XP_007975678   ⟸   XM_007977487
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007975679   ⟸   XM_007977488
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007975680   ⟸   XM_007977489
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S689 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016378   ⟸   ENSCSAT00000016883


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001648 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016883.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
NCBI Gene SYT6 ENTREZGENE
PANTHER PTHR10024:SF45 UniProtKB/TrEMBL
  SYNAPTOTAGMIN UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0D9S689 ENTREZGENE, UniProtKB/TrEMBL