CDH17 (cadherin 17) - Rat Genome Database

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Gene: CDH17 (cadherin 17) Chlorocebus sabaeus
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Symbol: CDH17
Name: cadherin 17
RGD ID: 18513064
Description: ENCODES a protein that exhibits cadherin binding (inferred); calcium ion binding (inferred); integrin binding (inferred); INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); oligopeptide transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); occupational asthma (ortholog); FOUND IN basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,101,788 - 89,179,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,101,744 - 89,179,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603951,669,207 - 51,747,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDH17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,101,788 - 89,179,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,101,744 - 89,179,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603951,669,207 - 51,747,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDH17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,127,162 - 94,217,278 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,127,162 - 94,217,303 (-)EnsemblGRCh38hg38GRCh38
GRCh37895,139,390 - 95,229,506 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,208,566 - 95,289,986 (-)NCBINCBI36Build 36hg18NCBI36
Build 34895,208,567 - 95,289,986NCBI
Celera891,325,519 - 91,415,635 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,347,824 - 90,438,513 (-)NCBIHuRef
CHM1_1895,179,693 - 95,269,835 (-)NCBICHM1_1
T2T-CHM13v2.0895,252,073 - 95,342,140 (-)NCBIT2T-CHM13v2.0
Cdh17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,758,157 - 11,817,905 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,758,147 - 11,817,895 (+)EnsemblGRCm39 Ensembl
GRCm38411,758,157 - 11,817,905 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,758,147 - 11,817,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv37411,685,304 - 11,745,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36411,685,362 - 11,745,042 (+)NCBIMGSCv36mm8
Celera411,569,441 - 11,628,305 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.35NCBI
Cdh17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8530,024,544 - 30,112,226 (+)NCBIGRCr8
mRatBN7.2525,262,820 - 25,314,884 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,262,758 - 25,314,884 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx527,387,641 - 27,439,661 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,980,395 - 29,032,405 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,922,774 - 28,974,871 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0525,354,187 - 25,443,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,391,115 - 25,443,718 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0530,100,327 - 30,152,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4526,047,222 - 26,099,173 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1526,047,170 - 26,099,164 (+)NCBI
Celera524,595,130 - 24,647,265 (+)NCBICelera
Cytogenetic Map5q13NCBI
Cdh17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,370,471 - 10,441,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,370,606 - 10,441,008 (-)NCBIChiLan1.0ChiLan1.0
CDH17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,460,208 - 111,527,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1886,997,151 - 87,064,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0890,750,904 - 90,818,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,695,117 - 92,785,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl892,696,182 - 92,760,732 (-)Ensemblpanpan1.1panPan2
CDH17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12938,918,098 - 38,980,709 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2938,918,574 - 38,977,217 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,079,502 - 39,142,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02939,122,089 - 39,184,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,107,346 - 39,239,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,135,742 - 39,198,280 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,130,928 - 39,193,449 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,572,504 - 39,635,045 (-)NCBIUU_Cfam_GSD_1.0
Cdh17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,573,286 - 40,636,936 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,156,213 - 7,205,127 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,156,213 - 7,208,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,515,276 - 42,597,772 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,508,852 - 42,597,888 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,926,942 - 46,015,745 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdh17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,543,048 - 1,621,978 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247631,543,341 - 1,621,970 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 4 16 29
Below cutoff 31 4 30

Sequence


RefSeq Acc Id: ENSCSAT00000010835   ⟹   ENSCSAP00000008922
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl889,101,744 - 89,179,251 (-)Ensembl
RefSeq Acc Id: XM_008001100   ⟹   XP_007999291
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1889,101,788 - 89,179,353 (-)NCBI
Vero_WHO_p1.0NW_02366603951,669,207 - 51,747,510 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008922.1
RefSeq Acc Id: XP_007999291   ⟸   XM_008001100
- UniProtKB: A0A0D9RJY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008922   ⟸   ENSCSAT00000010835


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010835.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
KEGG Report csab:103237140 UniProtKB/TrEMBL
NCBI Gene CDH17 ENTREZGENE
PANTHER CADHERIN-17 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0D9RJY3 ENTREZGENE, UniProtKB/TrEMBL