SLC37A1 (solute carrier family 37 member 1) - Rat Genome Database

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Gene: SLC37A1 (solute carrier family 37 member 1) Chlorocebus sabaeus
Analyze
Symbol: SLC37A1
Name: solute carrier family 37 member 1
RGD ID: 18511764
Description: ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (inferred); INVOLVED IN glucose-6-phosphate transport (inferred); phosphate ion transmembrane transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucose-6-phosphate exchanger SLC37A1; glycerol-3-phosphate transporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,375,198 - 86,457,028 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,390,936 - 86,457,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605414,346,766 - 14,426,450 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC37A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,375,198 - 86,457,028 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,390,936 - 86,457,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605414,346,766 - 14,426,450 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC37A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382142,499,622 - 42,581,426 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2142,496,008 - 42,581,440 (+)EnsemblGRCh38hg38GRCh38
GRCh372143,919,732 - 44,001,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362142,792,811 - 42,874,619 (+)NCBINCBI36Build 36hg18NCBI36
Build 342142,792,810 - 42,874,618NCBI
Celera2129,068,693 - 29,150,480 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2129,337,004 - 29,417,827 (+)NCBIHuRef
CHM1_12143,480,592 - 43,562,213 (+)NCBICHM1_1
T2T-CHM13v2.02140,889,339 - 40,971,074 (+)NCBIT2T-CHM13v2.0
Slc37a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,495,722 - 31,569,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1731,505,766 - 31,569,713 (+)EnsemblGRCm39 Ensembl
GRCm381731,295,135 - 31,350,709 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,286,792 - 31,350,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,432,428 - 31,487,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,024,193 - 31,079,419 (+)NCBIMGSCv36mm8
Celera1732,212,747 - 32,267,889 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1716.03NCBI
Slc37a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,361,733 - 9,435,227 (+)NCBIGRCr8
mRatBN7.2209,360,501 - 9,433,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl209,378,836 - 9,433,892 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2010,074,148 - 10,129,155 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,435,314 - 9,490,320 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0209,910,454 - 9,965,455 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02010,026,839 - 10,087,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2010,032,641 - 10,087,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02012,216,552 - 12,278,024 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,689,661 - 9,745,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1209,689,887 - 9,745,329 (+)NCBI
Celera2010,897,933 - 10,952,307 (+)NCBICelera
Cytogenetic Map20p12NCBI
Slc37a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,203,942 - 39,268,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,203,934 - 39,268,273 (-)NCBIChiLan1.0ChiLan1.0
SLC37A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22238,555,539 - 38,639,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12133,407,922 - 33,494,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02128,821,106 - 28,891,158 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12142,124,889 - 42,208,322 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2142,138,959 - 42,208,322 (+)Ensemblpanpan1.1panPan2
SLC37A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13136,815,384 - 36,889,563 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3136,828,382 - 36,889,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3135,966,041 - 36,040,155 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03136,331,922 - 36,406,001 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3136,345,431 - 36,406,868 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13136,224,393 - 36,298,344 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03136,204,934 - 36,279,420 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03136,700,173 - 36,775,474 (+)NCBIUU_Cfam_GSD_1.0
Slc37a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497136,065,178 - 36,128,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,337,993 - 1,387,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,338,135 - 1,402,632 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC37A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,843,095 - 205,898,586 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113205,826,948 - 205,901,824 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213216,297,945 - 216,352,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc37a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,954,454 - 28,009,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,954,552 - 28,009,327 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19 32
Low 17 20 28
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006142   ⟹   ENSCSAP00000004351
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl286,390,936 - 86,457,096 (+)Ensembl
RefSeq Acc Id: XM_007969220   ⟹   XP_007967411
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1286,390,336 - 86,457,028 (+)NCBI
Vero_WHO_p1.0NW_02366605414,358,906 - 14,426,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969228   ⟹   XP_007967419
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1286,375,198 - 86,457,028 (+)NCBI
Vero_WHO_p1.0NW_02366605414,346,766 - 14,426,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037984851   ⟹   XP_037840779
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605414,358,906 - 14,426,450 (+)NCBI
RefSeq Acc Id: XM_037984852   ⟹   XP_037840780
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605414,358,906 - 14,426,450 (+)NCBI
RefSeq Acc Id: XM_037984853   ⟹   XP_037840781
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605414,371,032 - 14,426,450 (+)NCBI
RefSeq Acc Id: XM_037984854   ⟹   XP_037840782
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605414,371,032 - 14,426,450 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007967419   ⟸   XM_007969228
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007967411   ⟸   XM_007969220
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000004351   ⟸   ENSCSAT00000006142
RefSeq Acc Id: XP_037840780   ⟸   XM_037984852
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037840779   ⟸   XM_037984851
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037840781   ⟸   XM_037984853
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037840782   ⟸   XM_037984854
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006142.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  SLC37A1_2 UniProtKB/TrEMBL
  Sugar_P_transporter UniProtKB/TrEMBL
NCBI Gene SLC37A1 ENTREZGENE
PANTHER GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A1 UniProtKB/TrEMBL
  MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PIRSF Hexose_phosphate_transp UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9R6W2_CHLSB UniProtKB/TrEMBL