CCNT2 (cyclin T2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CCNT2 (cyclin T2) Chlorocebus sabaeus
Analyze
Symbol: CCNT2
Name: cyclin T2
RGD ID: 18510763
Description: ENCODES a protein that exhibits 7SK snRNA binding (ortholog); chromatin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN early viral transcription (ortholog); late viral transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH genetic disease (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cyclin/CDK positive transcription elongation factor complex (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-T2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11019,145,163 - 19,183,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1019,145,161 - 19,180,917 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,919 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11019,145,163 - 19,183,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1019,145,161 - 19,180,917 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,919 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382134,918,822 - 134,959,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2134,918,235 - 134,959,342 (+)EnsemblGRCh38hg38GRCh38
GRCh372135,676,392 - 135,716,912 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362135,392,863 - 135,431,057 (+)NCBINCBI36Build 36hg18NCBI36
Build 342135,510,124 - 135,548,316NCBI
Celera2129,389,316 - 129,427,507 (+)NCBICelera
Cytogenetic Map2q21.3NCBI
HuRef2127,668,086 - 127,708,608 (+)NCBIHuRef
CHM1_12135,681,212 - 135,721,765 (+)NCBICHM1_1
T2T-CHM13v2.02135,359,158 - 135,399,741 (+)NCBIT2T-CHM13v2.0
Ccnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391127,701,901 - 127,732,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1127,701,901 - 127,735,798 (+)EnsemblGRCm39 Ensembl
GRCm381127,774,164 - 127,804,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1127,774,164 - 127,808,061 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,670,741 - 129,701,414 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,601,710 - 129,632,383 (+)NCBIMGSCv36mm8
Celera1130,415,607 - 130,446,300 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map155.8NCBI
Ccnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81341,804,007 - 41,845,641 (+)NCBIGRCr8
mRatBN7.21339,251,573 - 39,293,172 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,251,573 - 39,292,019 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1341,837,188 - 41,877,612 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,125,279 - 43,165,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,388,273 - 40,428,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01344,475,959 - 44,516,892 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1344,475,970 - 44,515,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01349,560,733 - 49,601,670 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41340,498,884 - 40,540,130 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11340,516,379 - 40,554,138 (-)NCBI
Celera1339,627,795 - 39,667,593 (+)NCBICelera
Cytogenetic Map13q13NCBI
Ccnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554402,424,978 - 2,470,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554402,424,976 - 2,468,388 (+)NCBIChiLan1.0ChiLan1.0
CCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21339,972,719 - 40,010,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B39,987,689 - 40,025,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B24,903,389 - 24,943,122 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B138,994,866 - 139,035,301 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B138,994,868 - 139,035,301 (+)Ensemblpanpan1.1panPan2
CCNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11937,743,442 - 37,787,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1937,743,235 - 37,783,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1937,983,447 - 38,027,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01939,188,742 - 39,233,204 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1939,188,029 - 39,231,246 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11937,831,213 - 37,875,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01937,992,184 - 38,036,607 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01939,227,340 - 39,271,785 (+)NCBIUU_Cfam_GSD_1.0
Ccnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303100,780,261 - 100,818,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646940,803,819 - 40,837,433 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646940,799,428 - 40,837,462 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1516,974,038 - 17,021,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11516,974,364 - 17,021,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21519,426,238 - 19,473,794 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ccnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473234,307,124 - 34,357,354 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014505   ⟹   ENSCSAP00000012477
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1019,145,161 - 19,180,917 (+)Ensembl
RefSeq Acc Id: XM_007964807   ⟹   XP_007962998
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11019,145,169 - 19,183,777 (+)NCBI
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964808   ⟹   XP_007962999
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11019,145,169 - 19,183,777 (+)NCBI
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964809   ⟹   XP_007963000
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11019,169,677 - 19,183,777 (+)NCBI
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,900 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037988073   ⟹   XP_037844001
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,915 (-)NCBI
RefSeq Acc Id: XM_037988074   ⟹   XP_037844002
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660613,318,380 - 3,358,915 (-)NCBI
RefSeq Acc Id: XR_490798
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11019,145,163 - 19,174,172 (+)NCBI
Vero_WHO_p1.0NW_0236660613,322,541 - 3,358,919 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007962998 (Get FASTA)   NCBI Sequence Viewer  
  XP_007962999 (Get FASTA)   NCBI Sequence Viewer  
  XP_007963000 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844001 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012477.1
Reference Protein Sequences
RefSeq Acc Id: XP_007962998   ⟸   XM_007964807
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RV38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962999   ⟸   XM_007964808
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RV38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963000   ⟸   XM_007964809
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000012477   ⟸   ENSCSAT00000014505
RefSeq Acc Id: XP_037844002   ⟸   XM_037988074
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037844001   ⟸   XM_037988073
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016413 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014505.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  CYCLIN_CCNT2_rpt1 UniProtKB/TrEMBL
  CYCLIN_CCNT2_rpt2 UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CCNT2 ENTREZGENE
PANTHER PTHR10026 UniProtKB/TrEMBL
  PTHR10026:SF43 UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/TrEMBL
  CycT2-like_C UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A0D9RV38 ENTREZGENE, UniProtKB/TrEMBL