LOC103247388 (DDB1- and CUL4-associated factor 12-like protein 2) - Rat Genome Database

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Gene: LOC103247388 (DDB1- and CUL4-associated factor 12-like protein 2) Chlorocebus sabaeus
Analyze
Symbol: LOC103247388
Name: DDB1- and CUL4-associated factor 12-like protein 2
RGD ID: 18510762
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DCAF12L2; DDB1 and CUL4 associated factor 12 like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606538,870,103 - 38,872,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103247388
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606538,870,103 - 38,872,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DCAF12L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X126,163,499 - 126,166,289 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX126,163,499 - 126,166,289 (-)EnsemblGRCh38hg38GRCh38
GRCh37X125,297,482 - 125,300,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X125,126,195 - 125,127,615 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX125,683,150 - 125,685,748 (-)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX114,677,469 - 114,680,067 (-)NCBIHuRef
CHM1_1X125,208,368 - 125,210,966 (-)NCBICHM1_1
T2T-CHM13v2.0X124,476,206 - 124,478,996 (-)NCBIT2T-CHM13v2.0
Dcaf12l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X43,454,334 - 43,457,214 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX43,454,335 - 43,457,219 (-)EnsemblGRCm39 Ensembl
GRCm38X44,365,457 - 44,368,337 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX44,365,458 - 44,368,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X41,718,634 - 41,721,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X40,610,085 - 40,612,969 (-)NCBIMGSCv36mm8
CeleraX31,900,316 - 31,903,196 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.85NCBI
Dcaf12l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X128,167,040 - 128,169,829 (-)NCBIGRCr8
mRatBN7.2X123,293,761 - 123,296,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX123,294,744 - 123,296,156 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X130,823,651 - 130,825,369 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX130,823,866 - 130,825,305 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X130,906,292 - 130,907,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X598,952 - 602,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX122,356,923 - 122,358,641 (-)NCBICelera
Cytogenetic MapXq35NCBI
Dcaf12l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554738,744,885 - 8,746,279 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554738,744,863 - 8,746,589 (+)NCBIChiLan1.0ChiLan1.0
DCAF12L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X125,637,005 - 125,639,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X125,640,617 - 125,643,504 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X115,346,153 - 115,349,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X125,525,080 - 125,527,429 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC609540
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX83,835,516 - 83,837,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X99,542,727 - 99,544,556 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0X98,794,007 - 98,795,577 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X98,521,261 - 98,522,828 (-)NCBIUU_Cfam_GSD_1.0
LOC100521308
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX103,325,989 - 103,327,383 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X103,322,468 - 103,327,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X118,320,653 - 118,323,147 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037989109   ⟹   XP_037845037
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606538,870,103 - 38,872,678 (-)NCBI
RefSeq Acc Id: XM_037989111   ⟹   XP_037845039
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606538,870,103 - 38,872,678 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037845037 (Get FASTA)   NCBI Sequence Viewer  
  XP_037845039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014339.1
Reference Protein Sequences
RefSeq Acc Id: XP_037845039   ⟸   XM_037989111
- UniProtKB: A0A0D9S0F0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845037   ⟸   XM_037989109
- UniProtKB: A0A0D9S0F0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018327 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016426.1 UniProtKB/TrEMBL
Gene3D-CATH YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene DCAF12L2 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 12-LIKE PROTEIN 1 UniProtKB/TrEMBL
  DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40 repeat-like UniProtKB/TrEMBL
UniProt A0A0D9S0F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103247388  DDB1- and CUL4-associated factor 12-like protein 2  DCAF12L2  DDB1 and CUL4 associated factor 12 like 2  Symbol and/or name change 5135510 APPROVED