MEIS3 (Meis homeobox 3) - Rat Genome Database

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Gene: MEIS3 (Meis homeobox 3) Chlorocebus sabaeus
Analyze
Symbol: MEIS3
Name: Meis homeobox 3
RGD ID: 18510601
Description: ENCODES a protein that exhibits chromatin binding (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of apoptotic signaling pathway (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Meis3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,730,208 - 40,747,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,729,230 - 40,746,741 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,464,484 - 20,481,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MEIS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,730,208 - 40,747,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,729,230 - 40,746,741 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,464,484 - 20,481,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MEIS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,403,124 - 47,422,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,403,124 - 47,419,527 (-)EnsemblGRCh38hg38GRCh38
GRCh371947,906,381 - 47,925,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,598,193 - 52,614,597 (-)NCBINCBI36Build 36hg18NCBI36
Celera1944,710,265 - 44,726,668 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1944,330,771 - 44,346,745 (-)NCBIHuRef
CHM1_11947,908,568 - 47,924,966 (-)NCBICHM1_1
T2T-CHM13v2.01950,228,571 - 50,253,087 (-)NCBIT2T-CHM13v2.0
Meis3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,908,684 - 15,920,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,909,015 - 15,920,429 (+)EnsemblGRCm39 Ensembl
GRCm38716,174,012 - 16,186,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,175,090 - 16,186,504 (+)EnsemblGRCm38mm10GRCm38
MGSCv37716,760,729 - 16,771,853 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,333,952 - 15,345,019 (+)NCBIMGSCv36mm8
Celera714,736,434 - 14,737,446 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.76NCBI
Meis3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,986,602 - 86,000,873 (+)NCBIGRCr8
mRatBN7.2176,861,267 - 76,872,691 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,861,924 - 76,872,691 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,235,960 - 82,246,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,799,986 - 90,810,801 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,991,059 - 84,001,871 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,065,617 - 78,079,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,068,931 - 78,079,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,335,318 - 79,346,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,513,672 - 76,524,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,579,037 - 76,602,545 (+)NCBI
Celera171,352,130 - 71,362,888 (+)NCBICelera
Cytogenetic Map1q21NCBI
Meis3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555741,273,321 - 1,282,455 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555741,273,321 - 1,282,454 (-)NCBIChiLan1.0ChiLan1.0
MEIS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,550,545 - 53,573,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,420,554 - 55,443,389 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,391,523 - 44,414,259 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,048,140 - 53,063,247 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,048,140 - 53,063,247 (-)Ensemblpanpan1.1panPan2
MEIS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,591,759 - 108,602,635 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,591,589 - 108,604,040 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,072,767 - 108,084,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,117,119 - 109,125,833 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,116,601 - 109,126,240 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,784,256 - 108,795,805 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,428,779 - 108,440,343 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,297,342 - 109,308,902 (+)NCBIUU_Cfam_GSD_1.0
Meis3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,477,686 - 19,487,633 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,095,772 - 1,105,808 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,095,815 - 1,105,751 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEIS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,175,928 - 53,188,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,175,920 - 53,188,455 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,817,091 - 48,842,383 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Meis3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,369,259 - 6,377,268 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,369,248 - 6,379,754 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 43
Low 16 14 17
Below cutoff 3

Sequence


RefSeq Acc Id: ENSCSAT00000000978   ⟹   ENSCSAP00000015089
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl640,729,230 - 40,746,741 (-)Ensembl
RefSeq Acc Id: XM_007997358   ⟹   XP_007995549
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1640,730,208 - 40,747,080 (-)NCBI
Vero_WHO_p1.0NW_02366607320,464,484 - 20,481,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007997359   ⟹   XP_007995550
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1640,730,208 - 40,747,086 (-)NCBI
Vero_WHO_p1.0NW_02366607320,464,484 - 20,481,274 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007995549 (Get FASTA)   NCBI Sequence Viewer  
  XP_007995550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015089
  ENSCSAP00000015089.1
RefSeq Acc Id: XP_007995550   ⟸   XM_007997359
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007995549   ⟸   XM_007997358
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S2K0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015089   ⟸   ENSCSAT00000000978


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002950 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000978.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_KN_domain UniProtKB/TrEMBL
  PKNOX/Meis_N UniProtKB/TrEMBL
KEGG Report csab:103234940 UniProtKB/TrEMBL
NCBI Gene MEIS3 ENTREZGENE
PANTHER HOMEOBOX PROTEIN MEIS3 UniProtKB/TrEMBL
  HOMEOBOX PROTEIN TRANSCRIPTION FACTORS UniProtKB/TrEMBL
Pfam Homeobox_KN UniProtKB/TrEMBL
  Meis_PKNOX_N UniProtKB/TrEMBL
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A0D9S2K0 ENTREZGENE, UniProtKB/TrEMBL