R3HCC1L (R3H domain and coiled-coil containing 1 like) - Rat Genome Database

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Gene: R3HCC1L (R3H domain and coiled-coil containing 1 like) Chlorocebus sabaeus
Analyze
Symbol: R3HCC1L
Name: R3H domain and coiled-coil containing 1 like
RGD ID: 18508205
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN exon-exon junction complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein R3HCC1L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1991,298,193 - 91,403,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl991,298,217 - 91,402,362 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604852,201,669 - 52,305,751 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
R3HCC1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1991,298,193 - 91,403,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl991,298,217 - 91,402,362 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604852,201,669 - 52,305,751 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
R3HCC1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381098,134,657 - 98,244,897 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1098,134,624 - 98,244,897 (+)EnsemblGRCh38hg38GRCh38
GRCh371099,894,414 - 100,004,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,884,371 - 99,994,644 (+)NCBINCBI36Build 36hg18NCBI36
Build 341099,884,424 - 99,994,641NCBI
Celera1093,631,432 - 93,741,704 (+)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1093,519,777 - 93,629,981 (+)NCBIHuRef
CHM1_110100,176,318 - 100,286,598 (+)NCBICHM1_1
T2T-CHM13v2.01099,015,039 - 99,125,276 (+)NCBIT2T-CHM13v2.0
R3hcc1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,506,419 - 42,580,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,507,198 - 42,580,782 (+)EnsemblGRCm39 Ensembl
GRCm381942,517,980 - 42,592,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,518,759 - 42,592,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv371942,593,295 - 42,666,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,572,116 - 42,645,567 (+)NCBIMGSCv36mm8
Celera1943,315,022 - 43,384,366 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.47NCBI
R3hcc1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,266,438 - 251,344,495 (+)NCBIGRCr8
mRatBN7.21241,317,199 - 241,395,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,317,272 - 241,395,240 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01261,753,295 - 261,833,437 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,753,364 - 261,831,703 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01269,205,748 - 269,283,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41248,290,331 - 248,299,161 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11248,406,704 - 248,462,040 (-)NCBI
Celera1237,149,836 - 237,228,695 (+)NCBICelera
Cytogenetic Map1q54NCBI
R3hcc1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555074,150,451 - 4,227,640 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555074,150,389 - 4,228,412 (+)NCBIChiLan1.0ChiLan1.0
R3HCC1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28110,037,048 - 110,149,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110110,042,367 - 110,155,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,745,499 - 94,858,413 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11098,241,566 - 98,354,545 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1098,270,484 - 98,354,545 (+)Ensemblpanpan1.1panPan2
R3HCC1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12811,316,684 - 11,396,475 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2811,328,904 - 11,439,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,500,428 - 11,579,915 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,641,921 - 11,721,705 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,641,992 - 11,721,700 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12811,326,012 - 11,405,492 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02811,364,377 - 11,443,866 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,503,828 - 11,583,581 (+)NCBIUU_Cfam_GSD_1.0
R3hcc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721335,538,105 - 35,630,253 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366361,577,953 - 1,669,353 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366361,577,220 - 1,669,314 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
R3HCC1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.114109,484,105 - 109,569,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,887,642 - 118,980,882 (+)NCBISscrofa10.2Sscrofa10.2susScr3
R3hcc1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,737,412 - 9,833,127 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,737,715 - 9,833,723 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 4 28
Low 16 16 32
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000003844   ⟹   ENSCSAP00000002116
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl991,298,217 - 91,402,362 (+)Ensembl
RefSeq Acc Id: XM_007963780   ⟹   XP_007961971
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1991,298,193 - 91,403,102 (+)NCBI
Vero_WHO_p1.0NW_02366604852,201,669 - 52,305,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963781   ⟹   XP_007961972
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1991,298,193 - 91,403,102 (+)NCBI
Vero_WHO_p1.0NW_02366604852,201,669 - 52,305,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038009417   ⟹   XP_037865345
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604852,201,793 - 52,305,751 (+)NCBI
RefSeq Acc Id: XM_038009418   ⟹   XP_037865346
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604852,201,793 - 52,305,751 (+)NCBI
RefSeq Acc Id: XM_038009419   ⟹   XP_037865347
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604852,201,669 - 52,305,751 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007961971 (Get FASTA)   NCBI Sequence Viewer  
  XP_007961972 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865345 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865346 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865347 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002116.1
Reference Protein Sequences
RefSeq Acc Id: XP_007961972   ⟸   XM_007963781
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R0H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961971   ⟸   XM_007963780
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R0H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000002116   ⟸   ENSCSAT00000003844
RefSeq Acc Id: XP_037865347   ⟸   XM_038009419
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R0H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865345   ⟸   XM_038009417
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R0H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865346   ⟸   XM_038009418
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R0H7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005808 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003844.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  R3HC1/R3HCL UniProtKB/TrEMBL
KEGG Report csab:103216357 UniProtKB/TrEMBL
NCBI Gene R3HCC1L ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN R3HCC1L UniProtKB/TrEMBL
  PTHR21678 UniProtKB/TrEMBL
UniProt A0A0D9R0H7 ENTREZGENE, UniProtKB/TrEMBL