CASR (calcium sensing receptor) - Rat Genome Database

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Gene: CASR (calcium sensing receptor) Chlorocebus sabaeus
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Symbol: CASR
Name: calcium sensing receptor
RGD ID: 18507921
Description: ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); bile acid secretion (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; E-cadherin signaling pathway; G protein mediated signaling pathway via Galpha12/Galpha13 family; ASSOCIATED WITH Albuminuria (ortholog); alkaptonuria (ortholog); atherosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); axon terminus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: extracellular calcium-sensing receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,579,640 - 58,612,142 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,578,396 - 58,604,756 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,618,566 - 107,763,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CASR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,579,640 - 58,612,142 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,578,396 - 58,604,756 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,618,566 - 107,763,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CASR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,183,668 - 122,291,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,183,668 - 122,291,629 (+)EnsemblGRCh38hg38GRCh38
GRCh373121,902,515 - 122,010,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,385,220 - 123,488,032 (+)NCBINCBI36Build 36hg18NCBI36
Build 343123,385,219 - 123,488,032NCBI
Celera3120,312,793 - 120,414,980 (+)NCBICelera
Cytogenetic Map3q13.33-q21.1NCBI
HuRef3119,276,062 - 119,378,878 (+)NCBIHuRef
CHM1_13121,866,087 - 121,968,904 (+)NCBICHM1_1
T2T-CHM13v2.03124,903,258 - 125,011,238 (+)NCBIT2T-CHM13v2.0
Casr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,310,947 - 36,382,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,314,058 - 36,382,503 (-)EnsemblGRCm39 Ensembl
GRCm381636,490,585 - 36,562,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,493,696 - 36,562,141 (-)EnsemblGRCm38mm10GRCm38
MGSCv371636,493,782 - 36,562,220 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,412,935 - 36,481,373 (-)NCBIMGSCv36mm8
Celera1636,909,014 - 36,977,753 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.57NCBI
Casr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,738,398 - 77,813,639 (+)NCBIGRCr8
mRatBN7.21164,235,251 - 64,304,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,235,251 - 64,304,811 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,047,649 - 73,119,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,709,872 - 65,781,465 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,740,787 - 64,812,771 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,188,204 - 67,262,261 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,188,630 - 67,258,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,278,784 - 70,352,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,084,169 - 66,153,292 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,141,757 - 66,210,881 (-)NCBI
Celera1163,705,377 - 63,774,888 (+)NCBICelera
Cytogenetic Map11q22NCBI
Casr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,486,427 - 21,575,210 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,486,608 - 21,574,017 (+)NCBIChiLan1.0ChiLan1.0
CASR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,132,419 - 120,238,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,137,198 - 120,243,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,278,071 - 119,383,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,252,765 - 126,285,268 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,252,765 - 126,285,268 (+)Ensemblpanpan1.1panPan2
CASR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,340,822 - 25,432,814 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,405,846 - 25,432,559 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,430,838 - 25,457,295 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,575,807 - 25,668,548 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,592,410 - 25,668,339 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,439,049 - 25,465,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,481,863 - 25,508,587 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,039,992 - 26,066,527 (+)NCBIUU_Cfam_GSD_1.0
Casr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,921,650 - 128,996,645 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,574,064 - 8,599,454 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,574,064 - 8,599,446 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,280,364 - 138,364,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,279,785 - 138,364,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,907,312 - 147,991,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Casr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912485,258 - 614,656 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624912485,252 - 613,572 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 2 11 6
Below cutoff 20 6 52

Sequence


RefSeq Acc Id: ENSCSAT00000005416   ⟹   ENSCSAP00000003635
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2258,578,396 - 58,604,756 (-)Ensembl
RefSeq Acc Id: XM_007985614   ⟹   XP_007983805
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12258,579,640 - 58,612,142 (-)NCBI
Vero_WHO_p1.0NW_023666041107,618,566 - 107,763,120 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007983805 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003635.1
RefSeq Acc Id: XP_007983805   ⟸   XM_007985614
- UniProtKB: A0A0D9R4U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000003635   ⟸   ENSCSAT00000005416


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005416.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_CS UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene CASR ENTREZGENE
PANTHER EXTRACELLULAR CALCIUM-SENSING RECEPTOR UniProtKB/TrEMBL
  PTHR24061 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PRINTS CASENSINGR UniProtKB/TrEMBL
  GPCRMGR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A0D9R4U6 ENTREZGENE, UniProtKB/TrEMBL