ZNF217 (zinc finger protein 217) - Rat Genome Database

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Gene: ZNF217 (zinc finger protein 217) Chlorocebus sabaeus
Analyze
Symbol: ZNF217
Name: zinc finger protein 217
RGD ID: 18501923
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); castration-resistant prostate carcinoma (ortholog); genetic disease (ortholog); FOUND IN histone deacetylase complex (ortholog); mitochondrion (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: branchpoint-bridging protein-like; LOC103244086; uncharacterized protein LOC103244086
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1210,427,584 - 10,455,308 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl210,439,082 - 10,450,670 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,645,726 - 58,673,818 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF217
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1210,427,584 - 10,455,308 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl210,439,082 - 10,450,670 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,645,726 - 58,673,818 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF217
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382053,567,071 - 53,597,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2053,567,071 - 53,609,907 (-)EnsemblGRCh38hg38GRCh38
GRCh372052,183,610 - 52,210,378 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,617,017 - 51,633,043 (-)NCBINCBI36Build 36hg18NCBI36
Build 342051,617,018 - 51,633,043NCBI
Celera2048,888,265 - 48,904,290 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2048,929,869 - 48,945,895 (-)NCBIHuRef
CHM1_12052,086,790 - 52,102,817 (-)NCBICHM1_1
T2T-CHM13v2.02055,339,255 - 55,382,109 (-)NCBIT2T-CHM13v2.0
Zfp217
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392169,950,563 - 169,993,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2169,950,563 - 169,990,023 (-)EnsemblGRCm39 Ensembl
GRCm382170,108,643 - 170,151,677 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2170,108,643 - 170,148,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv372169,934,143 - 169,968,175 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362169,801,284 - 169,822,425 (-)NCBIMGSCv36mm8
Celera2176,059,701 - 176,093,747 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map289.91NCBI
Zfp217
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83179,309,178 - 179,349,853 (-)NCBIGRCr8
mRatBN7.23158,890,464 - 158,931,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3158,892,265 - 158,913,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,692,169 - 162,702,892 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03171,191,598 - 171,202,319 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03168,932,990 - 168,943,713 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03166,981,419 - 167,022,349 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3166,983,220 - 166,994,286 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03173,095,053 - 173,107,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43161,150,458 - 161,161,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13161,058,673 - 161,071,074 (-)NCBI
Celera3157,442,743 - 157,453,463 (-)NCBICelera
Cytogenetic Map3q42NCBI
Znf217
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554455,326,905 - 5,337,573 (+)NCBIChiLan1.0ChiLan1.0
ZNF217
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,325,134 - 59,366,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12059,318,252 - 59,360,052 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02049,919,084 - 49,949,693 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12051,027,471 - 51,066,274 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2051,024,632 - 51,066,128 (-)Ensemblpanpan1.1panPan2
ZNF217
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12439,411,531 - 39,423,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2439,412,277 - 39,438,204 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2438,656,769 - 38,681,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02440,121,939 - 40,146,229 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2440,126,366 - 40,135,162 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12439,358,476 - 39,382,728 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02439,494,062 - 39,518,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02440,075,613 - 40,089,177 (-)NCBIUU_Cfam_GSD_1.0
Znf217
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640186,401,329 - 186,440,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365141,867,840 - 1,894,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365141,881,034 - 1,894,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF217
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1754,605,943 - 54,648,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11754,605,939 - 54,648,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21761,284,292 - 61,327,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf217
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,655,806 - 2,668,499 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,634,571 - 2,668,191 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 20 16
Low 20 44
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013373   ⟹   ENSCSAP00000011374
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl210,439,082 - 10,450,670 (+)Ensembl
RefSeq Acc Id: XM_008013762   ⟹   XP_008011953
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1210,427,584 - 10,455,308 (+)NCBI
Vero_WHO_p1.0NW_02366605058,645,726 - 58,673,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013770   ⟹   XP_008011961
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1210,438,810 - 10,455,308 (+)NCBI
Vero_WHO_p1.0NW_02366605058,646,066 - 58,673,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013781   ⟹   XP_008011972
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605058,646,065 - 58,673,818 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008011953 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011961 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011374
  ENSCSAP00000011374.1
Reference Protein Sequences
RefSeq Acc Id: XP_008011953   ⟸   XM_008013762
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008011961   ⟸   XM_008013770
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011374   ⟸   ENSCSAT00000013373
RefSeq Acc Id: XP_008011972   ⟸   XM_008013781
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013373.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF217 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 217 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RRY5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 ZNF217  zinc finger protein 217  LOC103244086  branchpoint-bridging protein-like  Data merged from RGD:18762986 737654 PROVISIONAL