HIP1R (huntingtin interacting protein 1 related) - Rat Genome Database

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Gene: HIP1R (huntingtin interacting protein 1 related) Chlorocebus sabaeus
Analyze
Symbol: HIP1R
Name: huntingtin interacting protein 1 related
RGD ID: 18500379
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); clathrin adaptor activity (inferred); INVOLVED IN postsynapse organization (ortholog); receptor-mediated endocytosis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: huntingtin-interacting protein 1-related protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,173,302 - 118,202,840 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,173,544 - 118,202,985 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,111,575 - 127,140,009 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HIP1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,173,302 - 118,202,840 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,173,544 - 118,202,985 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,111,575 - 127,140,009 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HIP1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,834,748 - 122,862,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,834,453 - 122,862,961 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,319,295 - 123,347,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,885,992 - 121,913,460 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map12q24.31NCBI
HuRef12120,292,995 - 120,307,523 (+)NCBIHuRef
CHM1_112123,288,408 - 123,315,480 (+)NCBICHM1_1
T2T-CHM13v2.012122,830,187 - 122,858,212 (+)NCBIT2T-CHM13v2.0
Hip1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,111,665 - 124,141,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,111,691 - 124,143,621 (+)EnsemblGRCm39 Ensembl
GRCm385123,973,602 - 124,003,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,973,628 - 124,005,558 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,423,637 - 124,453,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,234,257 - 124,263,818 (+)NCBIMGSCv36mm8
Celera5121,036,606 - 121,075,804 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.3NCBI
Hip1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,251,085 - 38,279,756 (-)NCBIGRCr8
mRatBN7.21232,590,164 - 32,618,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,590,165 - 32,618,734 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,768,901 - 33,797,424 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,380,245 - 34,408,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,432,136 - 33,460,662 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,024,517 - 38,053,184 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,024,519 - 38,053,085 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,895,504 - 39,924,082 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,714,225 - 33,742,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,577,648 - 33,606,180 (-)NCBI
Celera1234,277,732 - 34,306,331 (-)NCBICelera
Cytogenetic Map12q15NCBI
Hip1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,884,839 - 5,896,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,885,807 - 5,896,386 (-)NCBIChiLan1.0ChiLan1.0
HIP1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,927,935 - 130,956,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,924,306 - 130,953,266 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,438,841 - 120,467,489 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,672,109 - 124,700,726 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,685,091 - 124,700,726 (+)Ensemblpanpan1.1panPan2
HIP1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,623,583 - 6,639,107 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,624,791 - 6,637,659 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,785,375 - 6,813,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,872,729 - 6,901,296 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,873,942 - 6,901,454 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,805,561 - 6,834,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,898,281 - 6,926,838 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,851,903 - 6,880,452 (-)NCBIUU_Cfam_GSD_1.0
Hip1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,682,803 - 157,700,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,778,888 - 1,791,610 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,778,862 - 1,804,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIP1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,993,655 - 30,024,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,996,388 - 30,024,343 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,685,234 - 31,713,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Hip1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,876,276 - 22,896,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,876,183 - 22,897,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 32 9 59
Low 4 11 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000000103   ⟹   ENSCSAP00000015949
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl11118,173,544 - 118,202,985 (+)Ensembl
RefSeq Acc Id: XM_008005068   ⟹   XP_008003259
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111118,175,543 - 118,202,840 (+)NCBI
Vero_WHO_p1.0NW_023666037127,111,575 - 127,138,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005069   ⟹   XP_008003260
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111118,173,302 - 118,202,840 (+)NCBI
Vero_WHO_p1.0NW_023666037127,111,575 - 127,140,009 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008003259 (Get FASTA)   NCBI Sequence Viewer  
  XP_008003260 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015949.1
Reference Protein Sequences
RefSeq Acc Id: XP_008003260   ⟸   XM_008005069
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S510 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003259   ⟸   XM_008005068
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S510 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015949   ⟸   ENSCSAT00000000103


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002086 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000103.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/TrEMBL
  6.10.250.920 UniProtKB/TrEMBL
  I/LWEQ domain UniProtKB/TrEMBL
InterPro ANTH_dom UniProtKB/TrEMBL
  ENTH UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  HIP1_clath-bd UniProtKB/TrEMBL
  I/LWEQ_dom_sf UniProtKB/TrEMBL
  ILWEQ_dom UniProtKB/TrEMBL
  Sla2_fam UniProtKB/TrEMBL
NCBI Gene HIP1R ENTREZGENE
PANTHER PTHR10407 UniProtKB/TrEMBL
  PTHR10407:SF10 UniProtKB/TrEMBL
Pfam ANTH UniProtKB/TrEMBL
  HIP1_clath_bdg UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
PROSITE ENTH UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
SMART ENTH UniProtKB/TrEMBL
  ILWEQ UniProtKB/TrEMBL
Superfamily-SCOP SSF109885 UniProtKB/TrEMBL
  SSF48464 UniProtKB/TrEMBL
UniProt A0A0D9S510 ENTREZGENE, UniProtKB/TrEMBL