STRADB (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 87,096,768 - 87,127,131 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 87,096,838 - 87,127,209 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 112,293,201 - 112,322,783 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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STRADB (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 201,451,740 - 201,480,846 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 201,387,858 - 201,480,846 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 202,316,463 - 202,345,569 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 202,024,637 - 202,053,819 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 2 | 202,141,897 - 202,170,956 | NCBI | | | | | Celera | 2 | 196,068,337 - 196,097,512 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q33.1 | NCBI | | | | | HuRef | 2 | 194,164,497 - 194,193,482 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 202,322,488 - 202,351,676 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 201,932,523 - 201,961,624 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Stradb (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 59,012,681 - 59,034,281 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 59,012,681 - 59,034,874 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 58,973,522 - 58,995,122 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 58,973,522 - 58,995,715 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 59,030,415 - 59,051,966 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 58,918,117 - 58,939,668 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 59,489,295 - 59,510,821 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | C1.3 | NCBI | | | | | cM Map | 1 | 29.2 | NCBI | | | | |
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Stradb (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 67,908,277 - 67,927,224 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 60,414,182 - 60,433,084 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 60,414,182 - 60,433,084 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 68,909,965 - 68,928,356 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 74,025,925 - 74,044,316 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 72,344,201 - 72,362,592 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 65,763,437 - 65,782,513 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 65,763,437 - 65,782,513 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 65,570,181 - 65,589,257 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 57,540,915 - 57,559,817 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 57,853,259 - 57,871,982 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q31 | NCBI | | | | |
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Stradb (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955403 | 181,120 - 198,885 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955403 | 181,120 - 198,882 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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STRADB (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 104,075,176 - 104,104,917 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 104,090,176 - 104,119,917 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 88,705,840 - 88,735,511 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 206,861,151 - 206,890,868 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 206,864,319 - 206,890,868 (+) | Ensembl | panpan1.1 | | panPan2 | |
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STRADB (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 37 | 10,521,643 - 10,557,611 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 37 | 10,521,574 - 10,557,231 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 37 | 11,405,300 - 11,441,314 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 37 | 10,426,375 - 10,462,454 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 37 | 10,426,315 - 10,462,454 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 37 | 10,407,001 - 10,442,996 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 37 | 10,386,018 - 10,422,012 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 37 | 10,379,447 - 10,415,449 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Stradb (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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STRADB (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 15 | 105,055,274 - 105,126,927 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 15 | 105,055,218 - 105,083,429 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 15 | 116,465,665 - 116,493,729 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Stradb (Heterocephalus glaber - naked mole-rat) |
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