FOLR1 (folate receptor alpha) - Rat Genome Database

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Gene: FOLR1 (folate receptor alpha) Chlorocebus sabaeus
Analyze
Symbol: FOLR1
Name: folate receptor alpha
RGD ID: 18499275
Description: ENCODES a protein that exhibits folic acid binding (inferred); folic acid receptor activity (inferred); signaling receptor activity (inferred); INVOLVED IN folic acid metabolic process (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; folate cycle metabolic pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); Colonic Neoplasms (ortholog); FOUND IN brush border membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103247991
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,405,513 - 63,413,372 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,406,597 - 63,413,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,470,494 - 62,476,997 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FOLR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,405,513 - 63,413,372 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,406,597 - 63,413,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,470,494 - 62,476,997 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FOLR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,189,709 - 72,196,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,189,558 - 72,196,323 (+)EnsemblGRCh38hg38GRCh38
GRCh371171,900,753 - 71,907,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,578,250 - 71,585,014 (+)NCBINCBI36Build 36hg18NCBI36
Build 341171,580,855 - 71,585,014NCBI
Celera1169,202,176 - 69,208,941 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,193,609 - 68,200,378 (+)NCBIHuRef
CHM1_11171,784,063 - 71,790,828 (+)NCBICHM1_1
T2T-CHM13v2.01172,116,250 - 72,122,864 (+)NCBIT2T-CHM13v2.0
Folr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,507,551 - 101,519,974 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,507,538 - 101,519,995 (-)EnsemblGRCm39 Ensembl
GRCm387101,858,331 - 101,870,788 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,858,331 - 101,870,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,006,845 - 109,019,197 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,732,152 - 101,744,504 (-)NCBIMGSCv36mm8
Celera7102,230,147 - 102,242,481 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.67NCBI
Folr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,631,462 - 165,650,430 (-)NCBIGRCr8
mRatBN7.21156,219,460 - 156,238,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,219,460 - 156,230,667 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,209,769 - 164,220,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,389,863 - 171,401,069 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,267,520 - 164,278,567 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,934,457 - 166,945,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,934,460 - 166,943,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,124,242 - 173,135,651 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,315,191 - 159,324,141 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,394,208 - 159,403,158 (-)NCBI
Celera1154,298,870 - 154,310,077 (-)NCBICelera
Cytogenetic Map1q32NCBI
Folr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,187,388 - 19,197,728 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,188,830 - 19,197,728 (-)NCBIChiLan1.0ChiLan1.0
LOC100994139
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,138,207 - 73,144,766 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,180,529 - 74,188,172 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,268,721 - 67,275,498 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11170,492,039 - 70,498,665 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1170,492,039 - 70,498,665 (+)Ensemblpanpan1.1panPan2
LOC609612
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,944,350 - 25,951,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,714,017 - 25,720,656 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02126,153,187 - 26,159,847 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,153,297 - 26,159,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,944,449 - 25,951,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,160,593 - 26,167,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,062,191 - 26,068,851 (-)NCBIUU_Cfam_GSD_1.0
Folr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,892,012 - 59,897,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,491,547 - 1,497,226 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,489,916 - 1,497,200 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOLR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,757,040 - 6,760,402 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,753,513 - 6,760,433 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,515,002 - 7,521,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Folr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,820,163 - 4,851,339 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,830,164 - 4,850,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 18 11 21
Below cutoff 18 6 35

Sequence


RefSeq Acc Id: ENSCSAT00000002206   ⟹   ENSCSAP00000000533
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl163,406,597 - 63,413,352 (+)Ensembl
RefSeq Acc Id: XM_008020015   ⟹   XP_008018206
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1163,405,513 - 63,413,372 (+)NCBI
Vero_WHO_p1.0NW_02366604362,470,494 - 62,476,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038005521   ⟹   XP_037861449
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604362,470,494 - 62,476,335 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008018206 (Get FASTA)   NCBI Sequence Viewer  
  XP_037861449 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000533
  ENSCSAP00000000533.1
RefSeq Acc Id: XP_008018206   ⟸   XM_008020015
- UniProtKB: A0A0D9QVZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000533   ⟸   ENSCSAT00000002206
RefSeq Acc Id: XP_037861449   ⟸   XM_038005521
- UniProtKB: A0A0D9QVZ4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002206.1 UniProtKB/TrEMBL
InterPro Folate_rcpt UniProtKB/TrEMBL
  Folate_rcpt-like UniProtKB/TrEMBL
KEGG Report csab:103247991 UniProtKB/TrEMBL
NCBI Gene LOC103247991 ENTREZGENE
PANTHER PTHR10517 UniProtKB/TrEMBL
  PTHR10517:SF15 UniProtKB/TrEMBL
Pfam Folate_rec UniProtKB/TrEMBL
UniProt A0A0D9QVZ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 FOLR1  folate receptor alpha  LOC103247991  folate receptor alpha  Symbol and/or name change 5135510 APPROVED