ALKBH5 (alkB homolog 5, RNA demethylase) - Rat Genome Database

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Gene: ALKBH5 (alkB homolog 5, RNA demethylase) Chlorocebus sabaeus
Analyze
Symbol: ALKBH5
Name: alkB homolog 5, RNA demethylase
RGD ID: 18497542
Description: ENCODES a protein that exhibits lysophospholipase activity (ortholog); INVOLVED IN gamma-delta T cell proliferation (inferred); membraneless organelle assembly (inferred); mRNA destabilization (inferred); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN cytosol (inferred); Golgi apparatus (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA demethylase ALKBH5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,221,643 - 17,249,038 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,222,378 - 17,249,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,656,506 - 3,683,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ALKBH5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,221,643 - 17,249,038 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,222,378 - 17,249,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,656,506 - 3,683,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ALKBH5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,183,828 - 18,209,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,183,078 - 18,209,954 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,087,142 - 18,113,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,027,592 - 18,053,993 (+)NCBINCBI36Build 36hg18NCBI36
Celera1719,028,003 - 19,054,331 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,840,215 - 17,866,584 (+)NCBIHuRef
CHM1_11718,095,612 - 18,122,007 (+)NCBICHM1_1
T2T-CHM13v2.01718,130,641 - 18,156,760 (+)NCBIT2T-CHM13v2.0
Alkbh5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,428,509 - 60,449,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,427,207 - 60,449,338 (+)EnsemblGRCm39 Ensembl
GRCm381160,537,683 - 60,558,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,536,381 - 60,558,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,351,185 - 60,372,014 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,354,173 - 60,372,092 (+)NCBIMGSCv36mm8
Celera1165,862,595 - 65,871,990 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
Alkbh5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,844,411 - 45,865,853 (+)NCBIGRCr8
mRatBN7.21045,344,888 - 45,366,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,343,395 - 45,366,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,045,424 - 50,066,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,535,808 - 49,557,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,039,416 - 45,060,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,906,314 - 46,927,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,906,115 - 46,930,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,679,920 - 46,700,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,811,205 - 46,832,649 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,824,567 - 46,845,705 (+)NCBI
Celera1044,601,477 - 44,622,922 (+)NCBICelera
Cytogenetic Map10q22NCBI
Alkbh5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547811,105,920 - 11,128,222 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547811,104,445 - 11,128,980 (-)NCBIChiLan1.0ChiLan1.0
ALKBH5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21953,057,922 - 53,085,590 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,769,067 - 57,795,721 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,725,632 - 32,753,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,003,362 - 38,030,715 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,003,362 - 38,030,715 (-)Ensemblpanpan1.1panPan2
ALKBH5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,339,292 - 41,365,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,343,241 - 41,364,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,478,767 - 41,504,424 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,445,991 - 41,471,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,446,003 - 41,472,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,413,849 - 41,439,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,361,292 - 41,386,942 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,553,123 - 41,578,789 (-)NCBIUU_Cfam_GSD_1.0
Alkbh5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,112,447 - 61,137,218 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,729,679 - 1,757,419 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,729,707 - 1,756,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,507,667 - 60,529,733 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,507,662 - 60,530,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Alkbh5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,257,459 - 3,280,245 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,257,460 - 3,280,870 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ALKBH5
507 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008010545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000006232   ⟹   ENSCSAP00000004439
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1617,222,378 - 17,249,117 (+)Ensembl
RefSeq Acc Id: XM_008010545   ⟹   XP_008008736
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11617,221,643 - 17,249,038 (+)NCBI
Vero_WHO_p1.0NW_0236660593,656,506 - 3,683,620 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008008736 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004439
  ENSCSAP00000004439.1
RefSeq Acc Id: XP_008008736   ⟸   XM_008010545
- UniProtKB: A0A0D9R750 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004439   ⟸   ENSCSAT00000006232


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006232.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.590 UniProtKB/TrEMBL
InterPro AlkB-like UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/TrEMBL
  ALKBH5 UniProtKB/TrEMBL
KEGG Report csab:103242480 UniProtKB/TrEMBL
NCBI Gene ALKBH5 ENTREZGENE
PANTHER PTHR32074 UniProtKB/TrEMBL
  RNA DEMETHYLASE ALKBH5 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A0D9R750 ENTREZGENE, UniProtKB/TrEMBL