RNF121 (ring finger protein 121) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RNF121 (ring finger protein 121) Chlorocebus sabaeus
Analyze
Symbol: RNF121
Name: ring finger protein 121
RGD ID: 18497291
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,132,235 - 63,198,235 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,132,568 - 63,197,993 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,699,929 - 62,767,629 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNF121
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,132,235 - 63,198,235 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,132,568 - 63,197,993 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,699,929 - 62,767,629 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RNF121
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,929,046 - 71,997,597 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,929,018 - 71,997,597 (+)EnsemblGRCh38hg38GRCh38
GRCh371171,640,092 - 71,708,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,317,731 - 71,386,291 (+)NCBINCBI36Build 36hg18NCBI36
Celera1168,941,723 - 69,010,615 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1167,933,496 - 68,002,397 (+)NCBIHuRef
CHM1_11171,523,608 - 71,592,521 (+)NCBICHM1_1
T2T-CHM13v2.01171,855,935 - 71,924,512 (+)NCBIT2T-CHM13v2.0
Rnf121
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,668,344 - 101,721,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,668,344 - 101,714,676 (-)EnsemblGRCm39 Ensembl
GRCm387102,019,137 - 102,072,437 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,019,137 - 102,065,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,168,386 - 109,213,646 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,893,693 - 101,938,953 (-)NCBIMGSCv36mm8
Celera7102,394,568 - 102,440,284 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.71NCBI
Rnf121
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,789,356 - 165,858,832 (-)NCBIGRCr8
mRatBN7.21156,377,368 - 156,439,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,377,364 - 156,446,826 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,362,232 - 164,417,543 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,542,324 - 171,597,634 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,419,484 - 164,474,959 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,095,916 - 167,165,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,095,962 - 167,165,265 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,284,837 - 173,354,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,475,046 - 159,542,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,554,070 - 159,621,459 (-)NCBI
Celera1154,450,496 - 154,508,346 (-)NCBICelera
Cytogenetic Map1q32NCBI
Rnf121
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,332,670 - 19,423,677 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,332,670 - 19,423,711 (-)NCBIChiLan1.0ChiLan1.0
RNF121
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2972,879,127 - 72,947,578 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,921,674 - 73,989,916 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,009,574 - 67,078,105 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11170,233,723 - 70,302,576 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1170,233,723 - 70,302,576 (+)Ensemblpanpan1.1panPan2
RNF121
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12126,080,885 - 26,163,570 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2126,079,692 - 26,163,493 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,851,426 - 25,933,060 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02126,290,646 - 26,372,295 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,285,299 - 26,372,252 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12126,082,089 - 26,163,731 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,298,049 - 26,379,776 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,199,967 - 26,281,677 (-)NCBIUU_Cfam_GSD_1.0
Rnf121
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,691,781 - 59,753,951 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,291,067 - 1,352,528 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,291,072 - 1,353,487 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF121
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,488,806 - 6,587,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,488,756 - 6,587,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,250,224 - 7,348,883 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rnf121
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,968,684 - 5,051,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,968,790 - 5,051,573 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 8 51
Low 12 9
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000002234   ⟹   ENSCSAP00000000561
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl163,132,568 - 63,197,993 (+)Ensembl
RefSeq Acc Id: XM_008020002   ⟹   XP_008018193
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1163,132,235 - 63,198,235 (+)NCBI
Vero_WHO_p1.0NW_02366604362,699,929 - 62,767,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008020003   ⟹   XP_008018194
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1163,132,552 - 63,198,235 (+)NCBI
Vero_WHO_p1.0NW_02366604362,699,929 - 62,767,299 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008018193 (Get FASTA)   NCBI Sequence Viewer  
  XP_008018194 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000561
  ENSCSAP00000000561.1
RefSeq Acc Id: XP_008018193   ⟸   XM_008020002
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QW22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008018194   ⟸   XM_008020003
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000000561   ⟸   ENSCSAT00000002234


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004206 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002234.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RNF121/RNF175 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report csab:103247988 UniProtKB/TrEMBL
NCBI Gene RNF121 ENTREZGENE
PANTHER PTHR13407 UniProtKB/TrEMBL
  RING FINGER PROTEIN 121 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A0D9QW22 ENTREZGENE, UniProtKB/TrEMBL