TUT7 (terminal uridylyl transferase 7) - Rat Genome Database

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Gene: TUT7 (terminal uridylyl transferase 7) Chlorocebus sabaeus
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Symbol: TUT7
Name: terminal uridylyl transferase 7
RGD ID: 18490526
Description: ENCODES a protein that exhibits metal ion binding (inferred); miRNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN histone mRNA catabolic process (ortholog); oocyte maturation (ortholog); polyuridylation-dependent mRNA catabolic process (ortholog); PARTICIPATES IN microRNA pathway; FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: terminal uridylyltransferase 7; ZCCHC6; zinc finger CCHC-type containing 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,920,632 - 96,987,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,920,021 - 96,986,165 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleoplasm  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TUT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,920,632 - 96,987,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,920,021 - 96,986,165 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TUT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,287,733 - 86,354,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl986,287,733 - 86,354,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,902,648 - 88,969,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36988,092,468 - 88,159,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 34986,132,203 - 86,198,923NCBI
Celera959,472,766 - 59,539,516 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef958,725,479 - 58,792,201 (-)NCBIHuRef
CHM1_1989,049,089 - 89,115,852 (-)NCBICHM1_1
T2T-CHM13v2.0998,438,962 - 98,505,744 (-)NCBIT2T-CHM13v2.0
Tut7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,919,690 - 59,971,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,919,375 - 59,970,961 (-)EnsemblGRCm39 Ensembl
GRCm381359,771,876 - 59,823,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,771,561 - 59,823,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,873,240 - 59,924,508 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,781,502 - 59,832,724 (-)NCBIMGSCv36mm8
Celera1360,831,422 - 60,882,680 (-)NCBICelera
Cytogenetic Map13B2NCBI
cM Map1331.88NCBI
Tut7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,854,553 - 4,908,758 (+)NCBIGRCr8
mRatBN7.2174,849,287 - 4,903,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,849,283 - 4,903,169 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0175,225,854 - 5,279,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,225,835 - 5,271,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,451,199 - 7,505,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,752,875 - 10,806,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera174,970,855 - 5,024,770 (+)NCBICelera
Cytogenetic Map17p14NCBI
Tut7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,268,103 - 1,329,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,268,217 - 1,330,385 (+)NCBIChiLan1.0ChiLan1.0
TUT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21153,052,966 - 53,118,135 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1953,055,399 - 53,120,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0957,433,583 - 57,498,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1985,489,974 - 85,554,745 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl985,486,521 - 85,554,745 (-)Ensemblpanpan1.1panPan2
TUT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,400,648 - 73,464,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,401,421 - 73,475,493 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,162,268 - 74,226,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0173,707,237 - 73,771,495 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl173,707,227 - 73,771,495 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1173,515,084 - 73,579,269 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0173,281,944 - 73,345,972 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0173,987,748 - 74,051,975 (+)NCBIUU_Cfam_GSD_1.0
Tut7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947119,984,394 - 120,043,816 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366801,705,691 - 1,752,423 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366801,693,815 - 1,753,641 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1028,995,565 - 29,061,176 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11028,995,564 - 29,061,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,038,194 - 33,103,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tut7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480911,031,693 - 11,084,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480911,030,422 - 11,094,754 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005456   ⟹   ENSCSAP00000003675
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1296,920,021 - 96,986,165 (-)Ensembl
RefSeq Acc Id: XM_007969658   ⟹   XP_007967849
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,920,632 - 96,986,155 (-)NCBI
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969659   ⟹   XP_007967850
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,920,632 - 96,986,155 (-)NCBI
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969660   ⟹   XP_007967851
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,920,632 - 96,985,908 (-)NCBI
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969662   ⟹   XP_007967853
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,920,632 - 96,986,154 (-)NCBI
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,373 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969663   ⟹   XP_007967854
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,920,632 - 96,986,154 (-)NCBI
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969664   ⟹   XP_007967855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11296,931,630 - 96,986,154 (-)NCBI
Vero_WHO_p1.0NW_02366603885,282,978 - 85,337,373 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037998589   ⟹   XP_037854517
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,373 (-)NCBI
RefSeq Acc Id: XP_007967850   ⟸   XM_007969659
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967849   ⟸   XM_007969658
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967854   ⟸   XM_007969663
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967853   ⟸   XM_007969662
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967851   ⟸   XM_007969660
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967855   ⟸   XM_007969664
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R4Y6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003675   ⟸   ENSCSAT00000005456
RefSeq Acc Id: XP_037854517   ⟸   XM_037998589
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007408 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005456.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase_dom UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene TUT7 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/TrEMBL
  TERMINAL URIDYLYLTRANSFERASE 7 UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase UniProtKB/TrEMBL
  TUTF7_u4 UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A0D9R4Y6 ENTREZGENE, UniProtKB/TrEMBL