KIF9 (kinesin family member 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: KIF9 (kinesin family member 9) Chlorocebus sabaeus
Analyze
Symbol: KIF9
Name: kinesin family member 9
RGD ID: 18482909
Description: ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); identical protein binding (inferred); INVOLVED IN regulation of flagellated sperm motility (ortholog); ASSOCIATED WITH Luscan-Lumish Syndrome (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,626,636 - 8,685,473 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,632,849 - 8,680,002 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041158,458,854 - 158,513,267 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KIF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,626,636 - 8,685,473 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,632,849 - 8,680,002 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041158,458,854 - 158,513,267 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,227,998 - 47,282,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,227,998 - 47,283,451 (-)EnsemblGRCh38hg38GRCh38
GRCh37347,269,488 - 47,324,289 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,244,889 - 47,299,092 (-)NCBINCBI36Build 36hg18NCBI36
Build 34347,256,056 - 47,299,044NCBI
Celera347,207,813 - 47,262,937 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,312,539 - 47,367,369 (-)NCBIHuRef
CHM1_1347,219,815 - 47,274,651 (-)NCBICHM1_1
T2T-CHM13v2.0347,244,385 - 47,299,181 (-)NCBIT2T-CHM13v2.0
Kif9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,306,062 - 110,354,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,306,026 - 110,354,247 (+)EnsemblGRCm39 Ensembl
GRCm389110,476,738 - 110,525,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,476,958 - 110,525,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,379,462 - 110,427,678 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,321,841 - 110,369,990 (+)NCBIMGSCv36mm8
Celera9110,206,765 - 110,254,796 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.92NCBI
Kif9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,338,014 - 119,406,632 (+)NCBIGRCr8
mRatBN7.28110,459,467 - 110,504,492 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,459,383 - 110,505,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8116,081,418 - 116,119,090 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08114,280,603 - 114,318,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08112,123,396 - 112,161,081 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,737,739 - 118,795,190 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,744,229 - 118,794,992 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,080,023 - 118,136,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,867,604 - 114,906,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8109,750,428 - 109,788,776 (+)NCBICelera
Cytogenetic Map8q32NCBI
Kif9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,968,759 - 25,011,642 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,968,757 - 25,011,642 (+)NCBIChiLan1.0ChiLan1.0
KIF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,186,158 - 47,239,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,190,926 - 47,244,359 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,130,047 - 47,183,636 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,229,703 - 48,283,002 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,229,703 - 48,283,002 (-)Ensemblpanpan1.1panPan2
KIF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,587,202 - 41,637,768 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,588,443 - 41,637,781 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,503,482 - 41,556,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02042,069,872 - 42,122,920 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2042,070,125 - 42,120,544 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,311,752 - 41,364,717 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,713,080 - 41,766,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,993,516 - 42,046,554 (+)NCBIUU_Cfam_GSD_1.0
Kif9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,395,922 - 201,461,775 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936596952,028 - 1,010,889 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,014,991 - 30,063,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,014,468 - 30,062,871 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Kif9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473074,075,752 - 74,118,164 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473074,075,530 - 74,118,164 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007984021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000014143   ⟹   ENSCSAP00000012121
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl228,632,849 - 8,680,002 (-)Ensembl
RefSeq Acc Id: XM_007984024   ⟹   XP_007982215
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1228,632,203 - 8,685,236 (-)NCBI
Vero_WHO_p1.0NW_023666041158,459,048 - 158,513,267 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007984031   ⟹   XP_007982222
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1228,632,203 - 8,685,473 (-)NCBI
Vero_WHO_p1.0NW_023666041158,458,854 - 158,512,310 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007984035   ⟹   XP_007982226
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1228,632,203 - 8,685,236 (-)NCBI
Vero_WHO_p1.0NW_023666041158,459,048 - 158,513,267 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007984037   ⟹   XP_007982228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1228,632,203 - 8,685,473 (-)NCBI
Vero_WHO_p1.0NW_023666041158,458,854 - 158,512,312 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038004023   ⟹   XP_037859951
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,459,042 - 158,512,057 (+)NCBI
RefSeq Acc Id: XM_038004024   ⟹   XP_037859952
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,459,024 - 158,512,057 (+)NCBI
RefSeq Acc Id: XM_038004026   ⟹   XP_037859954
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,459,042 - 158,512,057 (+)NCBI
RefSeq Acc Id: XM_038004027   ⟹   XP_037859955
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,462,058 - 158,512,057 (+)NCBI
RefSeq Acc Id: XM_038004028   ⟹   XP_037859956
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,459,002 - 158,513,267 (+)NCBI
RefSeq Acc Id: XM_038004029   ⟹   XP_037859957
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041158,459,002 - 158,513,267 (+)NCBI
RefSeq Acc Id: XP_007982228   ⟸   XM_007984037
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982222   ⟸   XM_007984031
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982226   ⟸   XM_007984035
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982215   ⟸   XM_007984024
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000012121   ⟸   ENSCSAT00000014143
RefSeq Acc Id: XP_037859956   ⟸   XM_038004028
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037859957   ⟸   XM_038004029
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037859952   ⟸   XM_038004024
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037859951   ⟸   XM_038004023
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037859954   ⟸   XM_038004026
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037859955   ⟸   XM_038004027
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RU32 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014143.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene KIF9 ENTREZGENE
PANTHER CENTROMERE PROTEIN E UniProtKB/TrEMBL
  CENTROMERE-ASSOCIATED PROTEIN E UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RU32 ENTREZGENE, UniProtKB/TrEMBL