RADIL (Rap associating with DIL domain) - Rat Genome Database

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Gene: RADIL (Rap associating with DIL domain) Chlorocebus sabaeus
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Symbol: RADIL
Name: Rap associating with DIL domain
RGD ID: 18482357
Description: ENCODES a protein that exhibits GTPase binding (inferred); INVOLVED IN substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); FOUND IN microtubule (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-associating and dilute domain-containing protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,765,646 - 16,846,934 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2816,771,061 - 16,846,664 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660905,072,668 - 5,154,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RADIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,765,646 - 16,846,934 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2816,771,061 - 16,846,664 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660905,072,668 - 5,154,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RADIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3874,797,055 - 4,883,716 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl74,797,055 - 4,883,716 (-)EnsemblGRCh38hg38GRCh38
GRCh3774,836,686 - 4,923,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3674,805,266 - 4,889,861 (-)NCBINCBI36Build 36hg18NCBI36
Celera74,798,391 - 4,882,417 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef74,755,550 - 4,838,928 (-)NCBIHuRef
CHM1_174,838,485 - 4,923,073 (-)NCBICHM1_1
T2T-CHM13v2.074,914,262 - 5,000,912 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v274,885,095 - 4,969,690 (-)NCBI
Radil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,470,594 - 142,536,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,470,594 - 142,536,853 (-)EnsemblGRCm39 Ensembl
GRCm385142,483,795 - 142,551,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,484,839 - 142,551,098 (-)EnsemblGRCm38mm10GRCm38
MGSCv375142,960,795 - 143,027,031 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365142,737,315 - 142,803,551 (-)NCBIMGSCv36mm8
Celera5139,539,520 - 139,606,082 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.53NCBI
Radil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,137,872 - 17,202,021 (+)NCBIGRCr8
mRatBN7.21212,024,395 - 12,088,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1212,024,395 - 12,088,540 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,826,887 - 12,890,790 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,450,118 - 13,514,021 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,481,238 - 12,545,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,092,541 - 14,156,704 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,092,541 - 14,156,704 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01216,120,532 - 16,185,309 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,420,877 - 12,485,651 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,450,944 - 12,515,270 (+)NCBI
Celera1213,807,057 - 13,871,056 (+)NCBICelera
Cytogenetic Map12p11NCBI
Radil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,931,901 - 10,994,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,906,944 - 10,990,369 (+)NCBIChiLan1.0ChiLan1.0
RADIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v269,765,330 - 9,849,949 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,090,038 - 58,174,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,051,784 - 5,136,345 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,092,131 - 5,130,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,092,131 - 5,130,716 (-)Ensemblpanpan1.1panPan2
LOC479761
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,718,243 - 12,845,186 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,717,693 - 12,845,196 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,188,679 - 14,316,046 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,854,072 - 12,981,532 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,853,662 - 12,981,542 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1612,664,990 - 12,792,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,597,907 - 12,725,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,900,295 - 13,001,428 (+)NCBIUU_Cfam_GSD_1.0
Radil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344141,029,892 - 141,113,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367651,051,351 - 1,104,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367651,050,471 - 1,104,117 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RADIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl33,641,112 - 3,716,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.133,642,294 - 3,716,139 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,292,918 - 4,366,769 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000015738   ⟹   ENSCSAP00000013668
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2816,771,061 - 16,846,664 (+)Ensembl
RefSeq Acc Id: XM_008018805   ⟹   XP_008016996
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12816,765,646 - 16,846,934 (+)NCBI
Vero_WHO_p1.0NW_0236660905,072,668 - 5,154,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008018807   ⟹   XP_008016998
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12816,766,604 - 16,846,934 (+)NCBI
Vero_WHO_p1.0NW_0236660905,073,541 - 5,153,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008018809   ⟹   XP_008017000
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12816,810,150 - 16,846,934 (+)NCBI
Vero_WHO_p1.0NW_0236660905,073,541 - 5,111,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037995277   ⟹   XP_037851205
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660905,073,541 - 5,111,238 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008016996 (Get FASTA)   NCBI Sequence Viewer  
  XP_008016998 (Get FASTA)   NCBI Sequence Viewer  
  XP_008017000 (Get FASTA)   NCBI Sequence Viewer  
  XP_037851205 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013668.1
RefSeq Acc Id: XP_008016996   ⟸   XM_008018805
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008016998   ⟸   XM_008018807
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008017000   ⟸   XM_008018809
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000013668   ⟸   ENSCSAT00000015738
RefSeq Acc Id: XP_037851205   ⟸   XM_037995277
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017644 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015738.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/TrEMBL
InterPro CBD_Rasip1/Radil UniProtKB/TrEMBL
  Dilute_dom UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Vascular_dev_regulator UniProtKB/TrEMBL
NCBI Gene RADIL ENTREZGENE
PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W UniProtKB/TrEMBL
  RAS-ASSOCIATING AND DILUTE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam DIL UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
PROSITE DILUTE UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
SMART DIL UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0D9RYH9 ENTREZGENE, UniProtKB/TrEMBL