MRPL55 (mitochondrial ribosomal protein L55) - Rat Genome Database

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Gene: MRPL55 (mitochondrial ribosomal protein L55) Chlorocebus sabaeus
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Symbol: MRPL55
Name: mitochondrial ribosomal protein L55
RGD ID: 18481185
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L55, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MRPL55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,106,685 - 228,109,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,106,679 - 228,109,312 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,294,386 - 228,297,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,361,003 - 226,363,627 (-)NCBINCBI36Build 36hg18NCBI36
Celera1201,484,612 - 201,487,245 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,809,501 - 198,812,134 (-)NCBIHuRef
CHM1_11229,566,725 - 229,569,358 (-)NCBICHM1_1
T2T-CHM13v2.01227,295,671 - 227,315,175 (-)NCBIT2T-CHM13v2.0
Mrpl55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,093,312 - 59,096,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,093,312 - 59,096,960 (+)EnsemblGRCm39 Ensembl
GRCm381159,202,486 - 59,206,138 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,202,486 - 59,206,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,016,019 - 59,019,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,018,712 - 59,022,197 (+)NCBIMGSCv36mm8
Celera1163,967,585 - 63,971,075 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
Mrpl55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,488,252 - 44,491,401 (+)NCBIGRCr8
mRatBN7.21043,988,676 - 43,991,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,988,683 - 43,991,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,682,503 - 48,685,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,172,861 - 48,176,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,676,458 - 43,679,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,552,794 - 45,555,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,552,795 - 45,555,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,308,861 - 45,312,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,506,262 - 45,509,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,519,887 - 45,522,767 (+)NCBI
Celera1043,251,943 - 43,255,091 (+)NCBICelera
Cytogenetic Map10q22NCBI
Mrpl55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
MRPL55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
MRPL55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
Mrpl55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,766,963 - 87,770,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936864108,645 - 111,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mrpl55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937878,596 - 881,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937878,596 - 881,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 6 59
Low 14 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000014564   ⟹   ENSCSAP00000012534
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)Ensembl
RefSeq Acc Id: XM_007988199   ⟹   XP_007986390
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1251,618,831 - 1,621,460 (+)NCBI
Vero_WHO_p1.0NW_0236660551,500,041 - 1,502,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988201   ⟹   XP_007986392
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1251,618,831 - 1,621,460 (+)NCBI
Vero_WHO_p1.0NW_0236660551,500,041 - 1,502,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988202   ⟹   XP_007986393
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1251,618,831 - 1,621,460 (+)NCBI
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988203   ⟹   XP_007986394
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1251,618,831 - 1,621,460 (+)NCBI
Vero_WHO_p1.0NW_0236660551,500,041 - 1,502,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985470   ⟹   XP_037841398
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660551,500,041 - 1,502,647 (+)NCBI
RefSeq Acc Id: XM_037985471   ⟹   XP_037841399
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660551,500,884 - 1,502,647 (+)NCBI
RefSeq Acc Id: XP_007986394   ⟸   XM_007988203
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986393   ⟸   XM_007988202
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986392   ⟸   XM_007988201
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986390   ⟸   XM_007988199
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012534   ⟸   ENSCSAT00000014564
RefSeq Acc Id: XP_037841398   ⟸   XM_037985470
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841399   ⟸   XM_037985471
- UniProtKB: A0A0D9RV95 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016477 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014564.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.130.20 UniProtKB/TrEMBL
InterPro Ribosomal_L55_mit UniProtKB/TrEMBL
  Ribosomal_L55_sf UniProtKB/TrEMBL
KEGG Report csab:103229964 UniProtKB/TrEMBL
NCBI Gene MRPL55 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34095 UniProtKB/TrEMBL
Pfam Mitoc_L55 UniProtKB/TrEMBL
UniProt A0A0D9RV95 ENTREZGENE, UniProtKB/TrEMBL