PALM2AKAP2 (PALM2 and AKAP2 fusion) - Rat Genome Database

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Gene: PALM2AKAP2 (PALM2 and AKAP2 fusion) Chlorocebus sabaeus
Analyze
Symbol: PALM2AKAP2
Name: PALM2 and AKAP2 fusion
RGD ID: 18476021
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); protein kinase A binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell surface receptor protein serine/threonine kinase signaling pathway (ortholog); protein localization (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); Weight Gain (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A-kinase anchor protein 2; A-kinase anchoring protein 2; AKAP2; paralemmin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11229,371,705 - 29,908,100 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1229,371,209 - 29,604,909 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603512,809,675 - 13,393,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PALM2AKAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11229,371,705 - 29,908,100 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1229,371,209 - 29,604,909 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603512,809,675 - 13,393,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PALM2AKAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389109,640,787 - 110,172,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9109,498,325 - 110,172,512 (+)EnsemblGRCh38hg38GRCh38
GRCh379112,403,067 - 112,934,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369111,582,398 - 111,974,613 (+)NCBINCBI36Build 36hg18NCBI36
Build 349109,622,273 - 109,785,306NCBI
Celera983,044,274 - 83,436,417 (+)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef982,144,738 - 82,536,888 (+)NCBIHuRef
CHM1_19112,689,212 - 113,081,245 (+)NCBICHM1_1
T2T-CHM13v2.09121,810,203 - 122,342,040 (+)NCBIT2T-CHM13v2.0
Pakap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39457,434,475 - 57,896,984 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl457,434,247 - 57,712,016 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl457,717,657 - 57,896,984 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl457,568,179 - 57,896,982 (+)EnsemblGRCm39 Ensembl
GRCm38457,434,475 - 57,896,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl457,568,179 - 57,896,982 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl457,717,657 - 57,896,984 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl457,434,247 - 57,712,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv37457,581,154 - 57,730,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36457,662,302 - 57,805,856 (+)NCBIMGSCv36mm8
Celera457,480,009 - 57,628,214 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
Pakap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8576,976,906 - 77,443,656 (+)NCBIGRCr8
mRatBN7.2572,313,646 - 72,450,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2572,536,986 - 72,648,524 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,181,718 - 72,648,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx574,211,242 - 74,348,839 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHR_Utx574,496,206 - 74,539,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,317,831 - 76,361,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_SHRSP_BbbUtx_1.0576,032,899 - 76,170,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,005,037 - 76,142,624 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
UTH_Rnor_WKY_Bbb_1.0576,289,961 - 76,333,686 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0574,649,765 - 74,788,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0574,874,245 - 74,985,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,874,306 - 74,982,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,649,765 - 74,788,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0578,666,031 - 79,127,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0578,796,409 - 78,933,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4575,814,965 - 75,855,492 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1575,820,077 - 75,860,603 (+)NCBI
Celera571,164,073 - 71,300,762 (+)NCBICelera
Celera571,452,762 - 71,496,505 (+)NCBICelera
Cytogenetic Map5q24NCBI
PALM2AKAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21129,237,589 - 29,766,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1929,236,065 - 29,769,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0980,794,036 - 81,328,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19109,104,006 - 109,494,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9109,413,921 - 109,494,631 (+)Ensemblpanpan1.1panPan2
PALM2AKAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,841,405 - 65,178,204 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,842,167 - 65,175,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1163,241,589 - 63,578,592 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01165,975,096 - 66,305,415 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1165,834,080 - 66,304,619 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,495,896 - 64,825,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,515,888 - 64,846,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,206,125 - 65,537,222 (+)NCBIUU_Cfam_GSD_1.0
Palm2akap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,948,400 - 180,406,419 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365592,860,147 - 2,997,627 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365592,860,595 - 3,194,846 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PALM2AKAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,680,942 - 251,190,244 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,984,658 - 251,190,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,824,055 - 250,968,545 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21281,712,174 - 281,730,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21281,586,884 - 281,587,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 25 1 48
Low 11 19 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009851   ⟹   ENSCSAP00000007959
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1229,371,209 - 29,604,909 (-)Ensembl
RefSeq Acc Id: XM_007968461   ⟹   XP_007966652
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11229,371,705 - 29,908,100 (-)NCBI
Vero_WHO_p1.0NW_02366603512,809,913 - 13,393,649 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007968462   ⟹   XP_007966653
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11229,371,705 - 29,908,100 (-)NCBI
Vero_WHO_p1.0NW_02366603512,809,916 - 13,393,649 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007968463   ⟹   XP_007966654
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11229,375,726 - 29,908,100 (-)NCBI
Vero_WHO_p1.0NW_02366603512,809,913 - 13,393,649 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983407   ⟹   XP_037839335
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603512,809,946 - 13,393,649 (+)NCBI
RefSeq Acc Id: XM_037983410   ⟹   XP_037839338
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603512,809,913 - 13,393,649 (+)NCBI
RefSeq Acc Id: XM_037983413   ⟹   XP_037839341
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603512,980,763 - 13,393,649 (+)NCBI
RefSeq Acc Id: XM_037983417   ⟹   XP_037839345
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603512,809,913 - 13,393,649 (+)NCBI
RefSeq Acc Id: XM_037983420   ⟹   XP_037839348
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603512,809,675 - 13,151,322 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007966653   ⟸   XM_007968462
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966652   ⟸   XM_007968461
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966654   ⟸   XM_007968463
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000007959   ⟸   ENSCSAT00000009851
RefSeq Acc Id: XP_037839348   ⟸   XM_037983420
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037839338   ⟸   XM_037983410
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839345   ⟸   XM_037983417
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839335   ⟸   XM_037983407
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839341   ⟸   XM_037983413
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RH70 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011760 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009851.1 UniProtKB/TrEMBL
InterPro Paralemmin UniProtKB/TrEMBL
NCBI Gene AKAP2 ENTREZGENE
PANTHER PALM2 AND AKAP2 FUSION-RELATED UniProtKB/TrEMBL
  PARALEMMIN-RELATED UniProtKB/TrEMBL
Pfam Paralemmin UniProtKB/TrEMBL
UniProt A0A0D9RH70 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 PALM2AKAP2  PALM2 and AKAP2 fusion  AKAP2  A-kinase anchoring protein 2  Symbol and/or name change 5135510 APPROVED