RAPSN (receptor associated protein of the synapse) - Rat Genome Database

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Gene: RAPSN (receptor associated protein of the synapse) Chlorocebus sabaeus
Analyze
Symbol: RAPSN
Name: receptor associated protein of the synapse
RGD ID: 18471368
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); protein-macromolecule adaptor activity (ortholog); structural constituent of postsynaptic specialization (ortholog); INVOLVED IN establishment of protein localization to postsynaptic membrane (ortholog); motor neuron apoptotic process (ortholog); neuromuscular junction development (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH autoimmune disease (ortholog); congenital disorder of glycosylation type IIc (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 43 kDa receptor-associated protein of the synapse
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,867,721 - 17,887,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,868,888 - 17,887,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,165,684 - 115,176,850 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RAPSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,867,721 - 17,887,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,868,888 - 17,887,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,165,684 - 115,176,850 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAPSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,437,764 - 47,449,136 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,437,764 - 47,449,143 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,459,315 - 47,470,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,415,891 - 47,427,306 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,415,890 - 47,427,306NCBI
Celera1147,601,051 - 47,612,463 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,159,075 - 47,170,494 (-)NCBIHuRef
CHM1_11147,458,570 - 47,469,991 (-)NCBICHM1_1
T2T-CHM13v2.01147,597,603 - 47,608,976 (-)NCBIT2T-CHM13v2.0
Rapsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,864,594 - 90,876,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,865,965 - 90,876,074 (+)EnsemblGRCm39 Ensembl
GRCm38291,035,472 - 91,045,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,035,620 - 91,045,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,875,784 - 90,885,886 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,836,478 - 90,846,568 (+)NCBIMGSCv36mm8
Celera292,420,152 - 92,430,248 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.44NCBI
Rapsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,470,891 - 97,480,196 (+)NCBIGRCr8
mRatBN7.2377,015,073 - 77,024,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,983,471 - 77,024,373 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,493,612 - 80,502,907 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,092,627 - 89,101,922 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,943,726 - 86,953,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,859,815 - 79,869,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,860,179 - 79,869,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,568,568 - 86,578,239 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,396,836 - 75,406,115 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,293,208 - 75,302,485 (+)NCBI
Celera376,223,882 - 76,233,161 (+)NCBICelera
Cytogenetic Map3q24NCBI
Rapsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422826,727 - 834,289 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422826,556 - 834,483 (+)NCBIChiLan1.0ChiLan1.0
RAPSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,642,069 - 49,656,586 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,661,853 - 49,676,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,387,324 - 47,398,579 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,940,530 - 47,951,667 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,940,530 - 47,951,667 (-)Ensemblpanpan1.1panPan2
RAPSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,199,160 - 42,210,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,199,412 - 42,210,673 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,930,029 - 40,941,208 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,855,197 - 42,866,378 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,855,420 - 42,866,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,341,801 - 42,352,980 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,896,689 - 41,907,866 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,626,215 - 42,637,394 (+)NCBIUU_Cfam_GSD_1.0
Rapsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,680,416 - 19,692,511 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,795,905 - 1,804,181 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,796,087 - 1,804,153 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Rapsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,351,370 - 1,358,187 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,350,820 - 1,358,107 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19 3
Low 17 18 40
Below cutoff 2 17

Sequence


RefSeq Acc Id: ENSCSAT00000003816   ⟹   ENSCSAP00000002090
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl117,868,888 - 17,887,164 (+)Ensembl
RefSeq Acc Id: XM_007999536   ⟹   XP_007997727
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1117,867,721 - 17,887,162 (+)NCBI
Vero_WHO_p1.0NW_023666038115,165,961 - 115,176,850 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037999349   ⟹   XP_037855277
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038115,165,684 - 115,176,850 (+)NCBI
RefSeq Acc Id: XM_037999350   ⟹   XP_037855278
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038115,165,896 - 115,176,850 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007997727 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855277 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855278 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002090
  ENSCSAP00000002090.1
RefSeq Acc Id: XP_007997727   ⟸   XM_007999536
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R0F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000002090   ⟸   ENSCSAT00000003816
RefSeq Acc Id: XP_037855277   ⟸   XM_037999349
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037855278   ⟸   XM_037999350
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003816.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Postsynaptic UniProtKB/TrEMBL
  Postsynaptic_CS UniProtKB/TrEMBL
  Rapsyn_myristoylation/link_N UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report csab:103236109 UniProtKB/TrEMBL
NCBI Gene RAPSN ENTREZGENE
PANTHER 43 KDA RECEPTOR-ASSOCIATED PROTEIN OF THE SYNAPSE UniProtKB/TrEMBL
  43 KDA RECEPTOR-ASSOCIATED PROTEIN OF THE SYNAPSE UniProtKB/TrEMBL
Pfam Rapsyn_N UniProtKB/TrEMBL
  TPR_MalT UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
PRINTS POSTSYNAPTIC UniProtKB/TrEMBL
PROSITE 43_KD_POSTSYNAPTIC UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9R0F1 ENTREZGENE, UniProtKB/TrEMBL