TRIM15 (tripartite motif containing 15) - Rat Genome Database

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Gene: TRIM15 (tripartite motif containing 15) Chlorocebus sabaeus
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Symbol: TRIM15
Name: tripartite motif containing 15
RGD ID: 18470135
Description: ENCODES a protein that exhibits molecular sequestering activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of intracellular transport of viral material (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,334,910 - 42,345,895 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,812,605 - 29,822,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRIM15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,334,910 - 42,345,895 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,812,605 - 29,822,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TRIM15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,163,546 - 30,172,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,163,206 - 30,172,693 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,131,323 - 30,140,470 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,238,962 - 30,248,452 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,239,440 - 30,248,450NCBI
Celera631,729,242 - 31,738,732 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,929,149 - 29,938,639 (+)NCBIHuRef
CHM1_1630,133,056 - 30,142,549 (+)NCBICHM1_1
T2T-CHM13v2.0630,027,684 - 30,036,952 (+)NCBIT2T-CHM13v2.0
Trim15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,171,582 - 37,179,066 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,171,583 - 37,178,102 (-)EnsemblGRCm39 Ensembl
GRCm381736,860,690 - 36,867,367 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,860,691 - 36,867,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,997,636 - 37,004,155 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,468,744 - 36,475,240 (-)NCBIMGSCv36mm8
Celera1740,279,930 - 40,286,447 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Trim15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,703,723 - 1,715,465 (+)NCBIGRCr8
mRatBN7.2201,700,905 - 1,710,249 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,700,905 - 1,710,249 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,754,286 - 1,763,640 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,757,788 - 1,767,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,698,317 - 1,707,686 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,194,293 - 2,203,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,194,709 - 2,201,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,231,049 - 4,240,392 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera202,409,650 - 2,418,993 (+)NCBICelera
Cytogenetic Map20p12NCBI
Trim15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583277,564 - 283,422 (+)NCBIChiLan1.0ChiLan1.0
TRIM15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,754,566 - 44,764,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,717,551 - 40,727,965 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,939,261 - 29,949,706 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,610,348 - 30,619,833 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,610,348 - 30,619,826 (+)Ensemblpanpan1.1panPan2
Trim15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,711,536 - 32,718,708 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936723873,274 - 880,065 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936723869,019 - 880,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,731,274 - 22,743,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,730,372 - 22,742,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,832,991 - 24,844,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007973275   ⟹   XP_007971466
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11742,334,910 - 42,344,835 (-)NCBI
Vero_WHO_p1.0NW_02366604429,812,605 - 29,822,240 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007971466 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007971466   ⟸   XM_007973275


Additional Information

Database Acc Id Source(s)
NCBI Gene TRIM15 ENTREZGENE