TUT4 (terminal uridylyl transferase 4) - Rat Genome Database

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Gene: TUT4 (terminal uridylyl transferase 4) Chlorocebus sabaeus
Analyze
Symbol: TUT4
Name: terminal uridylyl transferase 4
RGD ID: 18469032
Description: ENCODES a protein that exhibits miRNA binding (ortholog); uridylyltransferase activity (ortholog); INVOLVED IN histone mRNA catabolic process (ortholog); interleukin-6-mediated signaling pathway (ortholog); miRNA catabolic process (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH breast cancer (ortholog); liver benign neoplasm (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: terminal uridylyltransferase 4; ZCCHC11; zinc finger CCHC-type containing 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12080,395,484 - 80,522,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2080,395,581 - 80,523,671 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603336,748,099 - 36,875,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TUT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12080,395,484 - 80,522,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2080,395,581 - 80,523,671 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603336,748,099 - 36,875,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TUT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38152,423,275 - 52,553,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl152,408,282 - 52,553,487 (-)EnsemblGRCh38hg38GRCh38
GRCh37152,888,947 - 53,018,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36152,661,535 - 52,791,331 (-)NCBINCBI36Build 36hg18NCBI36
Celera151,175,645 - 51,305,459 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,004,891 - 51,134,679 (-)NCBIHuRef
CHM1_1153,006,328 - 53,136,112 (-)NCBICHM1_1
T2T-CHM13v2.0152,304,743 - 52,434,560 (-)NCBIT2T-CHM13v2.0
Tut4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394108,316,607 - 108,416,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4108,316,623 - 108,416,618 (+)EnsemblGRCm39 Ensembl
GRCm384108,459,410 - 108,559,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,459,426 - 108,559,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv374108,132,031 - 108,232,020 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,957,358 - 108,057,347 (+)NCBIMGSCv36mm8
Celera4106,802,820 - 106,902,634 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.55NCBI
Tut4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,354,975 - 128,535,288 (+)NCBIGRCr8
mRatBN7.25123,201,723 - 123,306,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5125,825,672 - 125,929,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05127,548,743 - 127,652,301 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05127,600,037 - 127,703,592 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05128,063,880 - 128,168,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5128,083,118 - 128,168,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05131,905,082 - 132,009,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,565,023 - 129,860,103 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15129,590,506 - 129,865,448 (+)NCBI
Celera5121,938,291 - 122,041,113 (+)NCBICelera
Cytogenetic Map5q34NCBI
Tut4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,646,245 - 6,734,066 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,610,350 - 6,734,606 (+)NCBIChiLan1.0ChiLan1.0
TUT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,295,626 - 174,426,251 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,438,248 - 173,582,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0151,684,408 - 51,815,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1153,292,477 - 53,422,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,292,477 - 53,422,893 (-)Ensemblpanpan1.1panPan2
TUT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,832,208 - 8,958,136 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,832,199 - 9,047,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,984,410 - 9,117,778 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,955,383 - 9,088,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,955,377 - 9,067,361 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,768,557 - 8,901,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,857,421 - 8,990,869 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,874,086 - 9,008,805 (+)NCBIUU_Cfam_GSD_1.0
Tut4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505866,857,291 - 66,946,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365228,469,443 - 8,560,447 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365228,468,092 - 8,560,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,692,797 - 159,793,758 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,655,658 - 159,794,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26147,319,840 - 147,467,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tut4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624859675,754 - 800,343 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624859676,112 - 800,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000017256   ⟹   ENSCSAP00000016738
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2080,395,581 - 80,523,671 (+)Ensembl
RefSeq Acc Id: XM_007978739   ⟹   XP_007976930
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978740   ⟹   XP_007976931
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978741   ⟹   XP_007976932
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978742   ⟹   XP_007976933
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,395,485 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978743   ⟹   XP_007976934
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,395,484 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978745   ⟹   XP_007976936
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978747   ⟹   XP_007976938
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978748   ⟹   XP_007976939
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978749   ⟹   XP_007976940
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978750   ⟹   XP_007976941
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12080,421,640 - 80,522,442 (+)NCBI
Vero_WHO_p1.0NW_02366603336,748,099 - 36,874,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037999970   ⟹   XP_037855898
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603336,748,099 - 36,875,297 (-)NCBI
RefSeq Acc Id: XP_007976934   ⟸   XM_007978743
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007976933   ⟸   XM_007978742
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S799 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976930   ⟸   XM_007978739
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007976936   ⟸   XM_007978745
- Peptide Label: isoform X6
RefSeq Acc Id: XP_007976931   ⟸   XM_007978740
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007976932   ⟸   XM_007978741
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007976939   ⟸   XM_007978748
- Peptide Label: isoform X8
RefSeq Acc Id: XP_007976940   ⟸   XM_007978749
- Peptide Label: isoform X9
RefSeq Acc Id: XP_007976938   ⟸   XM_007978747
- Peptide Label: isoform X7
RefSeq Acc Id: XP_007976941   ⟸   XM_007978750
- Peptide Label: isoform X10
Ensembl Acc Id: ENSCSAP00000016738   ⟸   ENSCSAT00000017256
RefSeq Acc Id: XP_037855898   ⟸   XM_037999970
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017256.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase_dom UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene TUT4 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/TrEMBL
  TERMINAL URIDYLYLTRANSFERASE 4 UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A0D9S799 ENTREZGENE, UniProtKB/TrEMBL