LOC103216281 (protein FRA10AC1) - Rat Genome Database

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Gene: LOC103216281 (protein FRA10AC1) Chlorocebus sabaeus
Analyze
Symbol: LOC103216281 (Ensembl: FRA10AC1)
Name: protein FRA10AC1 (Ensembl:FRA10A associated CGG repeat 1)
RGD ID: 18468231
Description: INVOLVED IN mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH familial temporal lobe epilepsy 1 (ortholog); genetic disease (ortholog); Neurodevelopmental Disorder with Growth Retardation, Dysmorphic Facies, and Corpus Callosum Abnormalities (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FRA10AC1; fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1986,888,087 - 86,943,547 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,908,908 - 86,941,891 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604847,660,899 - 47,716,946 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103216281
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1986,888,087 - 86,943,547 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,908,908 - 86,941,891 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604847,660,899 - 47,716,946 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FRA10AC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381093,667,883 - 93,702,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1093,667,883 - 93,702,592 (-)EnsemblGRCh38hg38GRCh38
GRCh371095,427,640 - 95,462,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361095,418,319 - 95,452,319 (-)NCBINCBI36Build 36hg18NCBI36
Build 341095,418,318 - 95,452,319NCBI
Celera1089,168,766 - 89,203,452 (-)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,055,418 - 89,090,104 (-)NCBIHuRef
CHM1_11095,710,211 - 95,744,900 (-)NCBICHM1_1
T2T-CHM13v2.01094,547,814 - 94,582,886 (-)NCBIT2T-CHM13v2.0
Fra10ac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,176,925 - 38,213,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,176,929 - 38,212,604 (-)EnsemblGRCm39 Ensembl
GRCm381938,188,477 - 38,224,630 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,188,481 - 38,224,156 (-)EnsemblGRCm38mm10GRCm38
MGSCv371938,262,967 - 38,298,622 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,253,621 - 38,289,276 (-)NCBIMGSCv36mm8
MGSCv361937,835,857 - 37,871,482 (-)NCBIMGSCv36mm8
Celera1938,983,621 - 39,019,017 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.82NCBI
Fra10ac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,381,538 - 245,413,879 (-)NCBIGRCr8
mRatBN7.21235,969,071 - 236,001,074 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,969,112 - 236,001,210 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,391,408 - 244,423,291 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,286,282 - 251,318,136 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,124,524 - 244,156,382 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01256,881,688 - 256,913,617 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1256,881,771 - 256,914,260 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,362,185 - 264,394,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,518,980 - 242,550,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,731,105 - 242,764,400 (-)NCBI
Celera1233,062,502 - 233,094,359 (-)NCBICelera
Cytogenetic Map1q53NCBI
Fra10ac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955507182,212 - 242,313 (-)NCBIChiLan1.0ChiLan1.0
LOC100991425
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28105,710,073 - 105,742,844 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110105,715,388 - 105,748,487 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01090,416,441 - 90,451,334 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11093,928,917 - 93,961,671 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1093,935,893 - 93,959,257 (-)Ensemblpanpan1.1panPan2
FRA10AC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1287,891,451 - 7,929,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl287,891,591 - 7,926,818 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,067,352 - 8,104,659 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,151,297 - 8,188,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl288,151,299 - 8,186,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1287,870,900 - 7,908,233 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0287,900,260 - 7,937,651 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,070,180 - 8,107,511 (-)NCBIUU_Cfam_GSD_1.0
LOC101976474
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,681,754 - 39,711,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,317,090 - 1,343,234 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,314,679 - 1,343,234 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRA10AC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,122,910 - 105,167,660 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,125,513 - 105,169,866 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214114,857,536 - 114,901,751 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101703188
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247374,872,499 - 4,926,118 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 58
Low 20 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000004261   ⟹   ENSCSAP00000002522
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl986,908,908 - 86,941,891 (-)Ensembl
RefSeq Acc Id: XM_007963594   ⟹   XP_007961785
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,908,771 - 86,941,919 (-)NCBI
Vero_WHO_p1.0NW_02366604847,683,747 - 47,716,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007963596   ⟹   XP_007961787
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,908,771 - 86,941,926 (-)NCBI
Vero_WHO_p1.0NW_02366604847,683,747 - 47,716,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038009272   ⟹   XP_037865200
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,683,747 - 47,716,935 (-)NCBI
RefSeq Acc Id: XM_038009273   ⟹   XP_037865201
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,683,747 - 47,716,935 (-)NCBI
RefSeq Acc Id: XM_038009274   ⟹   XP_037865202
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,683,688 - 47,716,541 (-)NCBI
RefSeq Acc Id: XM_038009275   ⟹   XP_037865203
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,683,747 - 47,716,935 (-)NCBI
RefSeq Acc Id: XR_005244176
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,680,830 - 47,716,935 (-)NCBI
RefSeq Acc Id: XR_005244177
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604847,660,899 - 47,716,935 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007961787   ⟸   XM_007963596
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961785   ⟸   XM_007963594
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000002522   ⟸   ENSCSAT00000004261
RefSeq Acc Id: XP_037865202   ⟸   XM_038009274
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865203   ⟸   XM_038009275
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037865201   ⟸   XM_038009273
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865200   ⟸   XM_038009272
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1N3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006223 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004261.1 UniProtKB/TrEMBL
InterPro Folate-sensitive_fs_Fra10Ac1 UniProtKB/TrEMBL
NCBI Gene FRA10AC1 ENTREZGENE
Pfam Fra10Ac1 UniProtKB/TrEMBL
UniProt A0A0D9R1N3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103216281  protein FRA10AC1  FRA10AC1  fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1  Symbol and/or name change 5135510 APPROVED