RBM43 (RNA binding motif protein 43) - Rat Genome Database

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Gene: RBM43 (RNA binding motif protein 43) Chlorocebus sabaeus
Analyze
Symbol: RBM43
Name: RNA binding motif protein 43
RGD ID: 18466477
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 43
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,681,651 - 36,691,611 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1036,679,830 - 36,686,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040162,848,515 - 162,861,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RBM43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,681,651 - 36,691,611 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1036,679,830 - 36,686,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040162,848,515 - 162,861,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RBM43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382151,247,940 - 151,261,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2151,247,940 - 151,261,863 (-)EnsemblGRCh38hg38GRCh38
GRCh372152,104,454 - 152,118,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362151,814,156 - 151,826,623 (-)NCBINCBI36Build 36hg18NCBI36
Celera2145,718,988 - 145,732,652 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2144,001,276 - 144,014,871 (-)NCBIHuRef
CHM1_12152,110,570 - 152,124,230 (-)NCBICHM1_1
T2T-CHM13v2.02151,699,679 - 151,713,604 (-)NCBIT2T-CHM13v2.0
Rbm43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39251,814,460 - 51,825,175 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl251,814,460 - 51,825,175 (-)EnsemblGRCm39 Ensembl
GRCm38251,924,448 - 51,935,163 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl251,924,448 - 51,935,163 (-)EnsemblGRCm38mm10GRCm38
MGSCv37251,779,968 - 51,790,529 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36251,746,466 - 51,757,172 (-)NCBIMGSCv36mm8
Celera253,648,850 - 53,659,362 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Rbm43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8356,802,384 - 56,821,371 (-)NCBIGRCr8
mRatBN7.2336,394,431 - 36,404,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl336,395,346 - 36,404,816 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx339,780,190 - 39,790,346 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0348,364,969 - 48,375,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,149,553 - 46,159,687 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0337,434,616 - 37,446,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,434,620 - 37,445,907 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0342,538,127 - 42,550,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4332,938,135 - 32,958,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1332,831,292 - 32,855,254 (-)NCBI
Celera334,541,396 - 34,551,624 (-)NCBICelera
Cytogenetic Map3q12NCBI
Rbm43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544016,837,541 - 16,841,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544016,836,877 - 16,843,414 (-)NCBIChiLan1.0ChiLan1.0
RBM43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21323,678,600 - 23,693,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B23,693,560 - 23,708,097 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B8,611,744 - 8,626,269 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B155,783,603 - 155,794,297 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B155,783,924 - 155,788,743 (-)Ensemblpanpan1.1panPan2
Rbm43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,387,055 - 115,397,993 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646926,219,816 - 26,228,966 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646926,219,822 - 26,228,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Rbm43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248664,209,984 - 4,228,185 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248664,212,347 - 4,228,042 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 3 3
Low 33 19 57
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007964955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000014200   ⟹   ENSCSAP00000012179
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1036,679,830 - 36,686,904 (-)Ensembl
RefSeq Acc Id: XM_007964955   ⟹   XP_007963146
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11036,681,651 - 36,691,611 (-)NCBI
Vero_WHO_p1.0NW_023666040162,848,515 - 162,861,660 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007963146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012179
  ENSCSAP00000012179.1
Reference Protein Sequences
RefSeq Acc Id: XP_007963146   ⟸   XM_007964955
- UniProtKB: A0A0D9RU90 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012179   ⟸   ENSCSAT00000014200


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014200.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene RBM43 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR15225:SF8 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9RU90 ENTREZGENE, UniProtKB/TrEMBL