RB1CC1 (RB1 inducible coiled-coil 1) - Rat Genome Database

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Gene: RB1CC1 (RB1 inducible coiled-coil 1) Chlorocebus sabaeus
Analyze
Symbol: RB1CC1
Name: RB1 inducible coiled-coil 1
RGD ID: 18464333
Description: ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); autophagy (ortholog); defense response to virus (ortholog); PARTICIPATES IN autophagy pathway; mTOR signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); autophagosome membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RB1-inducible coiled-coil protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1848,726,551 - 48,818,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl848,724,393 - 48,817,928 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603993,172,844 - 93,267,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:28890335   PMID:30032202  


Genomics

Comparative Map Data
RB1CC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1848,726,551 - 48,818,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl848,724,393 - 48,817,928 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603993,172,844 - 93,267,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RB1CC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38852,622,458 - 52,714,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl852,622,458 - 52,745,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37853,535,018 - 53,626,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36853,697,571 - 53,789,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 34853,697,571 - 53,789,545NCBI
Celera849,525,378 - 49,617,590 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef849,002,571 - 49,094,645 (-)NCBIHuRef
CHM1_1853,587,331 - 53,679,316 (-)NCBICHM1_1
T2T-CHM13v2.0852,998,490 - 53,090,429 (-)NCBIT2T-CHM13v2.0
Rb1cc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3916,284,858 - 6,346,599 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl16,276,421 - 6,346,872 (+)EnsemblGRCm39 Ensembl
GRCm3816,214,634 - 6,276,375 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl16,206,197 - 6,276,648 (+)EnsemblGRCm38mm10GRCm38
MGSCv3716,204,743 - 6,266,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3616,204,743 - 6,265,656 (+)NCBIMGSCv36mm8
Celera16,202,698 - 6,263,115 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.89NCBI
Rb1cc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8517,948,522 - 18,012,434 (-)NCBIGRCr8
mRatBN7.2513,161,648 - 13,225,560 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl513,161,648 - 13,225,560 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx515,333,280 - 15,397,217 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0516,965,204 - 17,029,035 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0516,667,973 - 16,731,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0513,033,918 - 13,097,369 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl513,033,918 - 13,097,341 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0517,805,493 - 17,868,916 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4513,301,486 - 13,365,398 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1513,302,204 - 13,344,260 (-)NCBI
Celera512,575,595 - 12,639,516 (-)NCBICelera
Cytogenetic Map5q12NCBI
Rb1cc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545412,200,750 - 12,257,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545412,201,566 - 12,257,383 (-)NCBIChiLan1.0ChiLan1.0
RB1CC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2768,258,420 - 68,352,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1843,983,056 - 44,077,344 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0849,046,830 - 49,138,795 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1846,430,131 - 46,521,722 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl846,430,131 - 46,521,722 (-)Ensemblpanpan1.1panPan2
RB1CC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1294,445,668 - 4,544,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl294,375,785 - 4,517,168 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha294,885,675 - 4,984,178 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0294,511,613 - 4,608,379 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl294,511,616 - 4,608,599 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1294,442,480 - 4,540,952 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0294,668,260 - 4,766,907 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0294,742,370 - 4,841,030 (-)NCBIUU_Cfam_GSD_1.0
Rb1cc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530375,070,885 - 75,145,333 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936590260,685 - 334,721 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936590260,685 - 335,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RB1CC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,594,324 - 77,649,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1477,593,204 - 77,649,551 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Rb1cc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247352,778,191 - 2,860,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 9 60
Low 11
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012810   ⟹   ENSCSAP00000010831
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl848,724,393 - 48,817,928 (-)Ensembl
RefSeq Acc Id: XM_008000620   ⟹   XP_007998811
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1848,726,551 - 48,818,027 (-)NCBI
Vero_WHO_p1.0NW_02366603993,172,844 - 93,267,874 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007998811 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010831.1
Reference Protein Sequences
RefSeq Acc Id: XP_007998811   ⟸   XM_008000620
- UniProtKB: A0A0D9RQE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010831   ⟸   ENSCSAT00000012810


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014715 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012810.1 UniProtKB/TrEMBL
InterPro ATG11 UniProtKB/TrEMBL
  Atg11_C UniProtKB/TrEMBL
KEGG Report csab:103236790 UniProtKB/TrEMBL
NCBI Gene RB1CC1 ENTREZGENE
PANTHER PTHR13222 UniProtKB/TrEMBL
  RB1-INDUCIBLE COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
Pfam ATG11 UniProtKB/TrEMBL
UniProt A0A0D9RQE2 ENTREZGENE, UniProtKB/TrEMBL