STC2 (stanniocalcin 2) - Rat Genome Database

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Gene: STC2 (stanniocalcin 2) Chlorocebus sabaeus
Analyze
Symbol: STC2
Name: stanniocalcin 2
RGD ID: 18459580
Description: ENCODES a protein that exhibits enzyme binding (ortholog); heme binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); cellular response to hypoxia (ortholog); decidualization (ortholog); ASSOCIATED WITH atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); Breast Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stanniocalcin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,475,020 - 75,489,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,475,022 - 75,488,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,118,074 - 3,132,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,475,020 - 75,489,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,475,022 - 75,488,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,118,074 - 3,132,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,314,723 - 173,328,414 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,314,723 - 173,328,447 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,741,726 - 172,755,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,674,332 - 172,689,112 (-)NCBINCBI36Build 36hg18NCBI36
Build 345172,660,711 - 172,687,936NCBI
Celera5168,774,827 - 168,789,607 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5167,836,956 - 167,851,740 (-)NCBIHuRef
CHM1_15172,174,113 - 172,188,892 (-)NCBICHM1_1
T2T-CHM13v2.05173,854,781 - 173,868,472 (-)NCBIT2T-CHM13v2.0
Stc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,309,441 - 31,320,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,307,307 - 31,320,074 (-)EnsemblGRCm39 Ensembl
GRCm381131,359,441 - 31,370,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,357,307 - 31,370,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,259,441 - 31,270,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,259,441 - 31,270,061 (-)NCBIMGSCv36mm8
Celera1133,778,331 - 33,788,980 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.4NCBI
Stc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,755,508 - 16,765,275 (+)NCBIGRCr8
mRatBN7.21016,251,046 - 16,260,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,250,853 - 16,262,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,999,993 - 21,009,760 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,488,943 - 20,498,710 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,978,545 - 15,988,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,542,909 - 16,552,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,542,882 - 16,553,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,432,189 - 16,441,955 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,514,603 - 16,524,369 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,515,651 - 16,525,418 (+)NCBI
Celera1015,912,872 - 15,922,638 (+)NCBICelera
Cytogenetic Map10q12NCBI
Stc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,934,932 - 25,949,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,937,174 - 25,950,221 (-)NCBIChiLan1.0ChiLan1.0
STC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,451,252 - 168,463,400 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,588,413 - 166,603,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,668,851 - 168,681,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,575,412 - 175,587,832 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,575,419 - 175,587,832 (-)Ensemblpanpan1.1panPan2
STC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,151,951 - 39,165,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,152,503 - 39,162,343 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,097,951 - 39,109,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,523,070 - 39,537,223 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,524,206 - 39,534,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,341,084 - 39,355,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,529,915 - 39,543,843 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,038,732 - 40,052,874 (+)NCBIUU_Cfam_GSD_1.0
Stc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,596,596 - 93,607,949 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,319,111 - 2,332,988 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,319,546 - 2,331,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,989,433 - 51,004,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11650,989,676 - 51,001,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,330,021 - 55,341,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Stc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473316,773,644 - 16,785,214 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473316,773,422 - 16,787,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 28 11 20
Below cutoff 8 6 40

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008015319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000007615   ⟹   ENSCSAP00000005789
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2375,475,022 - 75,488,678 (-)Ensembl
RefSeq Acc Id: XM_008015319   ⟹   XP_008013510
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,475,020 - 75,489,727 (-)NCBI
Vero_WHO_p1.0NW_0236660343,118,074 - 3,132,787 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008013510 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005789
  ENSCSAP00000005789.1
Reference Protein Sequences
RefSeq Acc Id: XP_008013510   ⟸   XM_008015319
- UniProtKB: A0A0D9RB00 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000005789   ⟸   ENSCSAT00000007615


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009529 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007615.1 UniProtKB/TrEMBL
InterPro Stanniocalcin UniProtKB/TrEMBL
KEGG Report csab:103244991 UniProtKB/TrEMBL
NCBI Gene STC2 ENTREZGENE
PANTHER PTHR11245 UniProtKB/TrEMBL
  STANNIOCALCIN-2 UniProtKB/TrEMBL
Pfam Stanniocalcin UniProtKB/TrEMBL
UniProt A0A0D9RB00 ENTREZGENE, UniProtKB/TrEMBL