CENPJ (centromere protein J) - Rat Genome Database

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Gene: CENPJ (centromere protein J) Chlorocebus sabaeus
Analyze
Symbol: CENPJ
Name: centromere protein J
RGD ID: 18457494
Description: ENCODES a protein that exhibits gamma-tubulin binding (ortholog); identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN astral microtubule nucleation (ortholog); centriole assembly (ortholog); centriole replication (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); lissencephaly (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); procentriole replication complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,319,136 - 4,360,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,319,103 - 4,360,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,088,235 - 40,130,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CENPJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,319,136 - 4,360,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,319,103 - 4,360,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,088,235 - 40,130,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CENPJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381324,882,279 - 24,934,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1324,882,279 - 24,922,889 (-)EnsemblGRCh38hg38GRCh38
GRCh371325,456,417 - 25,496,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,354,412 - 24,395,085 (-)NCBINCBI36Build 36hg18NCBI36
Build 341324,355,171 - 24,395,018NCBI
Celera136,519,974 - 6,560,638 (-)NCBICelera
Cytogenetic Map13q12.12-q12.13NCBI
HuRef136,269,821 - 6,310,405 (-)NCBIHuRef
CHM1_11325,425,035 - 25,465,641 (-)NCBICHM1_1
T2T-CHM13v2.01324,090,519 - 24,142,252 (-)NCBIT2T-CHM13v2.0
Cenpj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,764,218 - 56,812,950 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,764,218 - 56,812,882 (-)EnsemblGRCm39 Ensembl
GRCm381456,526,761 - 56,575,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,526,761 - 56,575,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,145,598 - 57,190,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,480,871 - 55,525,942 (-)NCBIMGSCv36mm8
Celera1454,324,537 - 54,369,663 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.28NCBI
Cenpj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,742,838 - 34,806,020 (-)NCBIGRCr8
mRatBN7.21530,627,206 - 30,690,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,627,224 - 30,686,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,618,561 - 32,678,144 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,769,217 - 33,828,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,027,309 - 32,086,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,745,672 - 36,809,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,746,088 - 36,798,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,599,733 - 40,658,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,487,198 - 35,550,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,503,314 - 35,558,495 (-)NCBI
Celera1530,339,104 - 30,398,973 (-)NCBICelera
Cytogenetic Map15p12NCBI
Cenpj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497430,461 - 477,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497432,595 - 497,335 (-)NCBIChiLan1.0ChiLan1.0
CENPJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,480,417 - 24,525,024 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,589,327 - 15,634,675 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,175,936 - 6,215,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,464,045 - 24,503,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,464,045 - 24,503,432 (-)Ensemblpanpan1.1panPan2
CENPJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,555,182 - 18,611,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,557,084 - 18,610,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,583,170 - 18,636,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,692,566 - 18,748,546 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12518,557,406 - 18,610,759 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,569,509 - 18,622,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,626,287 - 18,679,651 (+)NCBIUU_Cfam_GSD_1.0
Cenpj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367202,149,302 - 2,204,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367202,149,296 - 2,201,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11289,653 - 355,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111289,660 - 357,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21187,284,454 - 87,296,300 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cenpj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477618,182,349 - 18,244,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477618,163,924 - 18,245,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 20 60
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000016103   ⟹   ENSCSAP00000014025
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl34,319,103 - 4,360,158 (-)Ensembl
RefSeq Acc Id: XM_008021744   ⟹   XP_008019935
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.134,319,136 - 4,360,214 (-)NCBI
Vero_WHO_p1.0NW_02366605740,088,237 - 40,130,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008021745   ⟹   XP_008019936
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.134,319,386 - 4,360,203 (-)NCBI
Vero_WHO_p1.0NW_02366605740,088,236 - 40,130,060 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008021746   ⟹   XP_008019937
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.134,325,000 - 4,360,204 (-)NCBI
Vero_WHO_p1.0NW_02366605740,088,235 - 40,126,016 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005236553
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605740,088,235 - 40,127,972 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008019935 (Get FASTA)   NCBI Sequence Viewer  
  XP_008019936 (Get FASTA)   NCBI Sequence Viewer  
  XP_008019937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014025
  ENSCSAP00000014025.1
Reference Protein Sequences
RefSeq Acc Id: XP_008019935   ⟸   XM_008021744
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RZI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008019936   ⟸   XM_008021745
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008019937   ⟸   XM_008021746
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000014025   ⟸   ENSCSAT00000016103


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016103.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.450.20 UniProtKB/TrEMBL
InterPro Tcp10_C_dom UniProtKB/TrEMBL
  Tcp10_C_sf UniProtKB/TrEMBL
  TCP10_fam UniProtKB/TrEMBL
KEGG Report csab:103249017 UniProtKB/TrEMBL
NCBI Gene CENPJ ENTREZGENE
PANTHER PTHR10331 UniProtKB/TrEMBL
  PTHR10331:SF23 UniProtKB/TrEMBL
Pfam Tcp10_C UniProtKB/TrEMBL
UniProt A0A0D9RZI6 ENTREZGENE, UniProtKB/TrEMBL