FBXO30 (F-box protein 30) - Rat Genome Database

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Gene: FBXO30 (F-box protein 30) Chlorocebus sabaeus
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Symbol: FBXO30
Name: F-box protein 30
RGD ID: 18457252
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); zinc ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 30
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11326,031,806 - 26,048,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1326,031,804 - 26,046,419 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040201,994,603 - 202,011,182 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FBXO30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11326,031,806 - 26,048,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1326,031,804 - 26,046,419 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040201,994,603 - 202,011,182 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FBXO30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386145,793,502 - 145,814,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6145,793,502 - 145,814,795 (-)EnsemblGRCh38hg38GRCh38
GRCh376146,114,638 - 146,135,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366146,160,964 - 146,177,614 (-)NCBINCBI36Build 36hg18NCBI36
Build 346146,160,965 - 146,177,614NCBI
Celera6146,859,626 - 146,876,275 (-)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6143,682,463 - 143,699,113 (-)NCBIHuRef
CHM1_16146,382,477 - 146,399,127 (-)NCBICHM1_1
T2T-CHM13v2.06146,986,553 - 147,007,846 (-)NCBIT2T-CHM13v2.0
Fbxo30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391011,157,009 - 11,181,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1011,157,074 - 11,173,796 (+)EnsemblGRCm39 Ensembl
GRCm381011,281,330 - 11,305,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1011,281,330 - 11,298,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv371011,001,128 - 11,017,767 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361010,971,564 - 10,987,155 (+)NCBIMGSCv36mm8
Celera1011,170,215 - 11,186,876 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.66NCBI
Fbxo30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr817,475,636 - 7,491,719 (+)NCBIGRCr8
mRatBN7.215,655,341 - 5,671,558 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl15,655,339 - 5,672,441 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15,355,989 - 5,371,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0111,356,347 - 11,372,144 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015,638,191 - 5,653,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015,366,119 - 5,389,774 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15,366,379 - 5,388,069 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.017,018,177 - 7,041,768 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,975,207 - 5,991,214 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115,975,206 - 5,991,212 (+)NCBI
Celera14,178,283 - 4,194,161 (+)NCBICelera
Cytogenetic Map1p13NCBI
Fbxo30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543614,837,162 - 14,842,520 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543614,837,162 - 14,842,615 (+)NCBIChiLan1.0ChiLan1.0
FBXO30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25165,791,255 - 165,807,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16163,679,238 - 163,700,514 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06143,580,146 - 143,601,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16148,299,673 - 148,316,921 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6148,299,673 - 148,307,939 (-)Ensemblpanpan1.1panPan2
FBXO30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,008,520 - 37,025,564 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,007,912 - 37,025,570 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha137,896,041 - 37,917,515 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0137,179,111 - 37,200,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl137,182,903 - 37,200,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1137,057,684 - 37,079,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0136,922,464 - 36,943,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0137,245,831 - 37,267,311 (-)NCBIUU_Cfam_GSD_1.0
Fbxo30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946131,951,240 - 131,965,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936625669,832 - 684,377 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936625669,859 - 684,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl119,764,591 - 19,777,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1119,756,232 - 19,777,621 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,999,978 - 22,019,388 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fbxo30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247538,636,088 - 8,653,855 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247538,635,680 - 8,654,642 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 9 3 21
Low 27 17 39
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000015213   ⟹   ENSCSAP00000013158
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1326,031,804 - 26,046,419 (+)Ensembl
RefSeq Acc Id: XM_008006743   ⟹   XP_008004934
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11326,031,806 - 26,048,390 (+)NCBI
Vero_WHO_p1.0NW_023666040201,994,603 - 202,011,182 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038002288   ⟹   XP_037858216
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040201,994,611 - 202,011,182 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008004934 (Get FASTA)   NCBI Sequence Viewer  
  XP_037858216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013158
  ENSCSAP00000013158.1
RefSeq Acc Id: XP_008004934   ⟸   XM_008006743
- UniProtKB: A0A0D9RX19 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013158   ⟸   ENSCSAT00000015213
RefSeq Acc Id: XP_037858216   ⟸   XM_038002288
- UniProtKB: A0A0D9RX19 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015213.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.30.40.150 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  Fbxo30/Fbxo40 UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_TRAF UniProtKB/TrEMBL
  Znf_TRAF_N UniProtKB/TrEMBL
KEGG Report csab:103240207 UniProtKB/TrEMBL
NCBI Gene FBXO30 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 30 UniProtKB/TrEMBL
  PTHR15933 UniProtKB/TrEMBL
Pfam F-box_4 UniProtKB/TrEMBL
  zf-TRAF_2 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
  ZF_TRAF UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/TrEMBL
UniProt A0A0D9RX19 ENTREZGENE, UniProtKB/TrEMBL