EIF2D (eukaryotic translation initiation factor 2D) - Rat Genome Database

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Gene: EIF2D (eukaryotic translation initiation factor 2D) Chlorocebus sabaeus
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Symbol: EIF2D
Name: eukaryotic translation initiation factor 2D
RGD ID: 18457113
Description: ENCODES a protein that exhibits RNA binding (inferred); translation initiation factor activity (inferred); INVOLVED IN formation of translation preinitiation complex (inferred); IRES-dependent viral translational initiation (inferred); ribosome disassembly (inferred); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,752,852 - 22,773,566 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,752,926 - 22,773,568 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,451,194 - 23,471,916 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EIF2D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,752,852 - 22,773,566 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,752,926 - 22,773,568 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,451,194 - 23,471,916 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EIF2D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,569,146 - 206,612,465 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,571,292 - 206,612,465 (-)EnsemblGRCh38hg38GRCh38
GRCh371206,764,974 - 206,785,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,831,597 - 204,852,527 (-)NCBINCBI36Build 36hg18NCBI36
Build 341203,153,371 - 203,174,299NCBI
Celera1180,016,423 - 180,037,351 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,463,289 - 177,484,217 (-)NCBIHuRef
CHM1_11208,037,181 - 208,058,090 (-)NCBICHM1_1
T2T-CHM13v2.01205,827,369 - 205,876,640 (-)NCBIT2T-CHM13v2.0
Eif2d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,080,903 - 131,115,396 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,080,918 - 131,115,395 (+)EnsemblGRCm39 Ensembl
GRCm381131,153,172 - 131,187,659 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,153,181 - 131,187,658 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,049,784 - 133,070,048 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,980,782 - 132,999,780 (+)NCBIMGSCv36mm8
Celera1133,775,887 - 133,795,744 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.9NCBI
Eif2d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,168,161 - 45,189,362 (+)NCBIGRCr8
mRatBN7.21342,615,901 - 42,637,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,615,911 - 42,639,719 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,222,598 - 45,241,563 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,510,729 - 46,529,694 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,774,845 - 43,793,785 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,935,138 - 47,958,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,935,163 - 47,954,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,011,077 - 53,033,762 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,099,725 - 44,118,652 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1342,961,793 - 42,980,721 (+)NCBICelera
Cytogenetic Map13q13NCBI
Eif2d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,163,632 - 42,181,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,163,508 - 42,181,482 (-)NCBIChiLan1.0ChiLan1.0
EIF2D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,762,926 - 42,784,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,728,446 - 42,750,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,193,709 - 182,214,981 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,473,496 - 186,494,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,473,496 - 186,494,896 (-)Ensemblpanpan1.1panPan2
EIF2D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,851,972 - 2,871,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,851,978 - 2,871,518 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,944,091 - 2,963,655 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,849,269 - 2,868,948 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,846,143 - 2,868,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,842,501 - 2,862,019 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0383,235,478 - 3,255,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,436,042 - 3,455,816 (-)NCBIUU_Cfam_GSD_1.0
Eif2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,725,272 - 68,745,708 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,965,504 - 5,986,064 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,965,496 - 5,985,993 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF2D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,240,588 - 67,261,223 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,240,586 - 67,261,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,593,837 - 73,614,045 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Eif2d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,818,585 - 4,836,280 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,818,652 - 4,834,898 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 19 60
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000013032   ⟹   ENSCSAP00000011045
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2522,752,926 - 22,773,568 (+)Ensembl
RefSeq Acc Id: XM_007988674   ⟹   XP_007986865
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12522,752,852 - 22,773,566 (+)NCBI
Vero_WHO_p1.0NW_02366605523,451,194 - 23,471,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988675   ⟹   XP_007986866
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12522,752,882 - 22,771,876 (+)NCBI
Vero_WHO_p1.0NW_02366605523,451,194 - 23,470,226 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986865 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011045
  ENSCSAP00000011045.1
RefSeq Acc Id: XP_007986865   ⟸   XM_007988674
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RR06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986866   ⟸   XM_007988675
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000011045   ⟸   ENSCSAT00000013032


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014939 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013032.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.400.20 UniProtKB/TrEMBL
  SUI1-like domain UniProtKB/TrEMBL
InterPro EIF2D UniProtKB/TrEMBL
  eIF2D_N UniProtKB/TrEMBL
  eIF2D_SUI1 UniProtKB/TrEMBL
  Pre-PUA UniProtKB/TrEMBL
  PUA UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  PUA_eIF2d-like UniProtKB/TrEMBL
  SUI1 UniProtKB/TrEMBL
  SUI1_dom_sf UniProtKB/TrEMBL
  SWIB_MDM2_dom_sf UniProtKB/TrEMBL
  SWIB_MDM2_domain UniProtKB/TrEMBL
KEGG Report csab:103230196 UniProtKB/TrEMBL
NCBI Gene EIF2D ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D UniProtKB/TrEMBL
  PTHR12217 UniProtKB/TrEMBL
Pfam Pre-PUA UniProtKB/TrEMBL
  SUI1 UniProtKB/TrEMBL
PROSITE PUA UniProtKB/TrEMBL
  SUI1 UniProtKB/TrEMBL
  SWIB_MDM2 UniProtKB/TrEMBL
SMART PUA UniProtKB/TrEMBL
Superfamily-SCOP SSF47592 UniProtKB/TrEMBL
  SSF55159 UniProtKB/TrEMBL
  SSF88697 UniProtKB/TrEMBL
UniProt A0A0D9RR06 ENTREZGENE, UniProtKB/TrEMBL