PACS1 (phosphofurin acidic cluster sorting protein 1) - Rat Genome Database

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Gene: PACS1 (phosphofurin acidic cluster sorting protein 1) Chlorocebus sabaeus
Analyze
Symbol: PACS1
Name: phosphofurin acidic cluster sorting protein 1
RGD ID: 18444495
Description: ENCODES a protein that exhibits transmembrane transporter binding (inferred); INVOLVED IN positive regulation of protein binding (ortholog); protein localization to Golgi apparatus (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,023,496 - 8,188,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,022,906 - 8,188,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,304,920 - 105,469,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PACS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,023,496 - 8,188,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,022,906 - 8,188,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,304,920 - 105,469,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PACS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,070,272 - 66,244,744 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,070,272 - 66,244,744 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,837,743 - 66,012,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,594,400 - 65,768,789 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,594,399 - 65,768,789NCBI
Celera1163,162,531 - 63,336,885 (+)NCBICelera
Cytogenetic Map11q13.1-q13.2NCBI
HuRef1162,163,679 - 62,338,147 (+)NCBIHuRef
CHM1_11165,721,963 - 65,896,313 (+)NCBICHM1_1
T2T-CHM13v2.01166,064,409 - 66,238,837 (+)NCBIT2T-CHM13v2.0
Pacs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,183,714 - 5,323,138 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,183,186 - 5,323,147 (-)EnsemblGRCm39 Ensembl
GRCm38195,133,685 - 5,273,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,133,158 - 5,273,119 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,133,685 - 5,273,119 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,133,685 - 5,273,119 (-)NCBIMGSCv36mm8
Celera195,003,057 - 5,142,124 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.25NCBI
Pacs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,866,872 - 211,998,828 (-)NCBIGRCr8
mRatBN7.21202,437,503 - 202,569,473 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,437,505 - 202,569,473 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,790,568 - 210,922,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,882,943 - 218,014,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,573,978 - 210,705,948 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,515,117 - 220,645,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,516,316 - 220,644,636 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,445,871 - 227,574,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,750,953 - 207,903,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,904,407 - 208,057,318 (-)NCBI
Celera1199,976,819 - 200,108,289 (-)NCBICelera
Cytogenetic Map1q43NCBI
Pacs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,070,414 - 19,240,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,070,369 - 19,240,424 (-)NCBIChiLan1.0ChiLan1.0
LOC100990116
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,302,895 - 67,501,683 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,345,760 - 68,544,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,434,702 - 61,633,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,884,038 - 64,935,947 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,884,048 - 64,935,947 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1164,949,223 - 64,959,233 (+)Ensemblpanpan1.1panPan2
PACS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,055,487 - 51,196,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,056,429 - 51,196,102 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,664,048 - 49,804,673 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,093,734 - 52,234,488 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,073,444 - 52,234,706 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,193,733 - 51,334,492 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,767,913 - 50,908,717 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,558,042 - 51,698,717 (-)NCBIUU_Cfam_GSD_1.0
Pacs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,902,893 - 6,937,318 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,344,037 - 3,379,671 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,345,242 - 3,379,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,138,351 - 6,174,632 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,138,345 - 6,277,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,210,248 - 5,349,333 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pacs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,123,725 - 20,324,967 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,123,845 - 20,325,191 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 6 59
Low 14 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007978166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000006185   ⟹   ENSCSAP00000004395
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl18,022,906 - 8,188,171 (-)Ensembl
RefSeq Acc Id: XM_007978166   ⟹   XP_007976357
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.118,023,496 - 8,188,192 (-)NCBI
Vero_WHO_p1.0NW_023666038105,304,920 - 105,469,412 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007976357 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004395
  ENSCSAP00000004395.1
Reference Protein Sequences
RefSeq Acc Id: XP_007976357   ⟸   XM_007978166
- UniProtKB: A0A0D9R706 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004395   ⟸   ENSCSAT00000006185


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008134 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006185.1 UniProtKB/TrEMBL
InterPro Phosphofurin_acidic_CS-1 UniProtKB/TrEMBL
KEGG Report csab:103224526 UniProtKB/TrEMBL
NCBI Gene PACS1 ENTREZGENE
PANTHER PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR13280 UniProtKB/TrEMBL
Pfam Pacs-1 UniProtKB/TrEMBL
UniProt A0A0D9R706 ENTREZGENE, UniProtKB/TrEMBL