GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial) - Rat Genome Database

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Gene: GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial) Chlorocebus sabaeus
Analyze
Symbol: GPAT2
Name: glycerol-3-phosphate acyltransferase 2, mitochondrial
RGD ID: 18442378
Description: ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); INVOLVED IN glycerol-3-phosphate metabolic process (ortholog); phosphatidic acid biosynthetic process (ortholog); piRNA processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); pheochromocytoma (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103241059
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114467,715 - 480,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14467,841 - 478,106 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041167,877,736 - 167,890,137 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GPAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114467,715 - 480,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14467,841 - 478,106 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041167,877,736 - 167,890,137 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,021,946 - 96,036,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,021,946 - 96,039,451 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,687,694 - 96,702,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,051,421 - 96,064,454 (-)NCBINCBI36Build 36hg18NCBI36
Celera291,128,633 - 91,141,666 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,655,485 - 90,668,519 (-)NCBIHuRef
CHM1_1296,692,065 - 96,705,114 (-)NCBICHM1_1
T2T-CHM13v2.0295,919,725 - 96,542,891 (-)NCBIT2T-CHM13v2.0
Gpat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,266,725 - 127,278,013 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,267,119 - 127,278,012 (+)EnsemblGRCm39 Ensembl
GRCm382127,425,154 - 127,436,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,425,199 - 127,436,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,250,935 - 127,261,828 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362127,116,640 - 127,127,533 (+)NCBIMGSCv36mm8
Celera2128,667,248 - 128,678,128 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.0NCBI
Gpat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83135,099,751 - 135,110,355 (+)NCBIGRCr8
mRatBN7.23114,646,446 - 114,657,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,648,498 - 114,657,051 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,537,855 - 118,546,392 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03127,133,414 - 127,141,951 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,793,787 - 124,802,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,949,921 - 120,003,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,994,537 - 120,003,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03127,329,508 - 127,382,675 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,930,678 - 114,939,231 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13114,832,227 - 114,844,800 (+)NCBI
Celera3113,486,965 - 113,495,518 (+)NCBICelera
Cytogenetic Map3q36NCBI
Gpat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,632,869 - 3,643,642 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,633,076 - 3,643,635 (-)NCBIChiLan1.0ChiLan1.0
GPAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,272,586 - 32,286,209 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,275,339 - 32,288,968 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,278,885 - 103,293,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GPAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,682,079 - 34,695,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,678,630 - 34,695,970 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,451,461 - 34,465,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,452,995 - 35,466,569 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,453,064 - 35,466,599 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,582,353 - 34,595,905 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,650,601 - 34,664,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,859,873 - 34,873,451 (+)NCBIUU_Cfam_GSD_1.0
Gpat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629282,930,788 - 82,943,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744183,882 - 193,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744183,679 - 194,448 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1345,843,666 - 45,857,406 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2348,487,223 - 48,500,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gpat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,153,112 - 2,160,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,152,755 - 2,161,139 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 32 18 46
Below cutoff 4 2 14

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015473   ⟹   ENSCSAP00000013413
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl14467,841 - 478,106 (-)Ensembl
RefSeq Acc Id: XM_038002638   ⟹   XP_037858566
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041167,877,736 - 167,890,137 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037858566 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013413.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000013413   ⟸   ENSCSAT00000015473
RefSeq Acc Id: XP_037858566   ⟸   XM_038002638
- UniProtKB: A0A0D9RXS4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017382 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015473.1 UniProtKB/TrEMBL
InterPro GPAT/DHAPAT UniProtKB/TrEMBL
  GPAT/DHAPAT_C UniProtKB/TrEMBL
  GPAT/DHAPAT_LPLAT UniProtKB/TrEMBL
  Plipid/glycerol_acylTrfase UniProtKB/TrEMBL
NCBI Gene LOC103241059 ENTREZGENE
PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12563 UniProtKB/TrEMBL
Pfam GPAT_C UniProtKB/TrEMBL
SMART PlsC UniProtKB/TrEMBL
Superfamily-SCOP Glycerol-3-phosphate (1)-acyltransferase UniProtKB/TrEMBL
UniProt A0A0D9RXS4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 GPAT2  glycerol-3-phosphate acyltransferase 2, mitochondrial  LOC103241059  glycerol-3-phosphate acyltransferase 2, mitochondrial  Symbol and/or name change 5135510 APPROVED